Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SHROOM3Q8TF72 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SHROOM3Q8TF72 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHROOM3Q8TF72 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHROOM3Q8TF72 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHROOM3Q8TF72 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SHROOM3Q8TF72 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.51■□□□□ 0.87
SHROOM3Q8TF72 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHROOM3Q8TF72 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHROOM3Q8TF72 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
SHROOM3Q8TF72 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.51■□□□□ 0.87
SHROOM3Q8TF72 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHROOM3Q8TF72 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SHROOM3Q8TF72 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.51■□□□□ 0.87
SHROOM3Q8TF72 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
SHROOM3Q8TF72 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 MIPEPP3-201ENST00000412105 444 ntBASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 AC142381.4-202ENST00000563973 229 ntBASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SHROOM3Q8TF72 AFG3L1P-217ENST00000557444 2447 ntBASIC20.49■□□□□ 0.87
SHROOM3Q8TF72 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM3Q8TF72 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.49■□□□□ 0.87
SHROOM3Q8TF72 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM3Q8TF72 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM3Q8TF72 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
SHROOM3Q8TF72 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM3Q8TF72 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
SHROOM3Q8TF72 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
SHROOM3Q8TF72 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM3Q8TF72 AC098590.1-201ENST00000468126 897 ntBASIC20.49■□□□□ 0.87
SHROOM3Q8TF72 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM3Q8TF72 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM3Q8TF72 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.49■□□□□ 0.87
SHROOM3Q8TF72 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM3Q8TF72 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM3Q8TF72 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM3Q8TF72 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM3Q8TF72 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 AL031963.3-201ENST00000606441 850 ntBASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 AC092118.2-201ENST00000613495 667 ntBASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM3Q8TF72 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM3Q8TF72 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM3Q8TF72 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM3Q8TF72 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM3Q8TF72 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
SHROOM3Q8TF72 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM3Q8TF72 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM3Q8TF72 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM3Q8TF72 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM3Q8TF72 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
SHROOM3Q8TF72 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms