Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 DYM-203ENST00000442713 2147 ntTSL 2 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 AC012618.2-201ENST00000428058 849 ntBASIC6.17□□□□□ -1.42
SYNE1Q8NF91 RARRES2P10-201ENST00000564312 460 ntBASIC6.17□□□□□ -1.42
SYNE1Q8NF91 AC012306.2-201ENST00000609350 630 ntBASIC6.17□□□□□ -1.42
SYNE1Q8NF91 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 WWC2-AS2-201ENST00000578387 2183 ntBASIC6.17□□□□□ -1.42
SYNE1Q8NF91 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 SERF2-207ENST00000409614 582 ntTSL 2 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 AC120498.8-201ENST00000614275 531 ntBASIC6.17□□□□□ -1.42
SYNE1Q8NF91 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 CDV3P1-201ENST00000471403 739 ntBASIC6.17□□□□□ -1.42
SYNE1Q8NF91 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC6.17□□□□□ -1.42
SYNE1Q8NF91 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 PRR31-201ENST00000371629 978 ntTSL 2 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 AC105020.6-201ENST00000621523 1217 ntBASIC6.16□□□□□ -1.42
SYNE1Q8NF91 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 LY6E-205ENST00000519611 635 ntTSL 3 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 SPIB-206ENST00000596074 847 ntTSL 2 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 SRI-203ENST00000419179 1307 ntTSL 2 BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SYNE1Q8NF91 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms