Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 HOMER2P1-201ENST00000455653 964 ntBASIC23.96■■□□□ 1.43
SMC1BQ8NDV3 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC23.96■■□□□ 1.43
SMC1BQ8NDV3 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC23.96■■□□□ 1.43
SMC1BQ8NDV3 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC23.96■■□□□ 1.43
SMC1BQ8NDV3 CALM1-205ENST00000553542 877 ntTSL 5 BASIC23.96■■□□□ 1.43
SMC1BQ8NDV3 SLC25A1P4-201ENST00000567977 778 ntBASIC23.96■■□□□ 1.43
SMC1BQ8NDV3 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
SMC1BQ8NDV3 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC23.96■■□□□ 1.43
SMC1BQ8NDV3 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
SMC1BQ8NDV3 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
SMC1BQ8NDV3 AC068473.5-201ENST00000616428 2072 ntBASIC23.95■■□□□ 1.42
SMC1BQ8NDV3 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
SMC1BQ8NDV3 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
SMC1BQ8NDV3 B3GAT3P1-201ENST00000471720 806 ntBASIC23.95■■□□□ 1.42
SMC1BQ8NDV3 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC23.95■■□□□ 1.42
SMC1BQ8NDV3 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC23.95■■□□□ 1.42
SMC1BQ8NDV3 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
SMC1BQ8NDV3 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC23.95■■□□□ 1.42
SMC1BQ8NDV3 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC23.95■■□□□ 1.42
SMC1BQ8NDV3 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC23.95■■□□□ 1.42
SMC1BQ8NDV3 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
SMC1BQ8NDV3 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
SMC1BQ8NDV3 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 PPP1R14BP5-201ENST00000440334 435 ntBASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 AC011558.1-201ENST00000623459 338 ntBASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC23.94■■□□□ 1.42
SMC1BQ8NDV3 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
SMC1BQ8NDV3 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
SMC1BQ8NDV3 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
SMC1BQ8NDV3 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC23.93■■□□□ 1.42
SMC1BQ8NDV3 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
SMC1BQ8NDV3 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
SMC1BQ8NDV3 CD70-202ENST00000423145 881 ntTSL 2 BASIC23.93■■□□□ 1.42
SMC1BQ8NDV3 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC23.93■■□□□ 1.42
SMC1BQ8NDV3 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC23.93■■□□□ 1.42
SMC1BQ8NDV3 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC23.93■■□□□ 1.42
SMC1BQ8NDV3 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
SMC1BQ8NDV3 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
SMC1BQ8NDV3 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
SMC1BQ8NDV3 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
SMC1BQ8NDV3 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SMC1BQ8NDV3 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SMC1BQ8NDV3 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SMC1BQ8NDV3 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
SMC1BQ8NDV3 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
SMC1BQ8NDV3 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SMC1BQ8NDV3 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SMC1BQ8NDV3 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
SMC1BQ8NDV3 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
SMC1BQ8NDV3 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
SMC1BQ8NDV3 DAP-202ENST00000432074 1048 ntTSL 2 BASIC23.92■■□□□ 1.42
SMC1BQ8NDV3 CD81-212ENST00000526072 1172 ntTSL 5 BASIC23.92■■□□□ 1.42
SMC1BQ8NDV3 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC23.92■■□□□ 1.42
SMC1BQ8NDV3 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC23.92■■□□□ 1.42
SMC1BQ8NDV3 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC23.92■■□□□ 1.42
SMC1BQ8NDV3 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC23.92■■□□□ 1.42
SMC1BQ8NDV3 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SMC1BQ8NDV3 PREB-202ENST00000406567 1910 ntTSL 5 BASIC23.92■■□□□ 1.42
SMC1BQ8NDV3 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
SMC1BQ8NDV3 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SMC1BQ8NDV3 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SMC1BQ8NDV3 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC23.91■■□□□ 1.42
SMC1BQ8NDV3 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
SMC1BQ8NDV3 RN7SL510P-201ENST00000581311 263 ntBASIC23.91■■□□□ 1.42
SMC1BQ8NDV3 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
SMC1BQ8NDV3 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SMC1BQ8NDV3 AC130371.2-201ENST00000619443 611 ntBASIC23.91■■□□□ 1.42
SMC1BQ8NDV3 CR769767.2-201ENST00000622735 460 ntBASIC23.91■■□□□ 1.42
SMC1BQ8NDV3 AC116562.4-202ENST00000641738 218 ntBASIC23.91■■□□□ 1.42
SMC1BQ8NDV3 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
SMC1BQ8NDV3 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
SMC1BQ8NDV3 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SMC1BQ8NDV3 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC23.91■■□□□ 1.42
SMC1BQ8NDV3 ANKRD20A18P-201ENST00000359341 492 ntBASIC23.9■■□□□ 1.42
SMC1BQ8NDV3 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
SMC1BQ8NDV3 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
SMC1BQ8NDV3 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC23.9■■□□□ 1.42
SMC1BQ8NDV3 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC23.9■■□□□ 1.42
SMC1BQ8NDV3 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
SMC1BQ8NDV3 AL031432.5-201ENST00000641059 760 ntBASIC23.9■■□□□ 1.42
SMC1BQ8NDV3 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC23.9■■□□□ 1.42
SMC1BQ8NDV3 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms