Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC21.12■□□□□ 0.97
SCUBE3Q8IX30 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SCUBE3Q8IX30 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SCUBE3Q8IX30 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
SCUBE3Q8IX30 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.12■□□□□ 0.97
SCUBE3Q8IX30 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.12■□□□□ 0.97
SCUBE3Q8IX30 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.12■□□□□ 0.97
SCUBE3Q8IX30 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SCUBE3Q8IX30 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC21.12■□□□□ 0.97
SCUBE3Q8IX30 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SCUBE3Q8IX30 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SCUBE3Q8IX30 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 HLA-B-256ENST00000639848 1089 ntBASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 AC112907.3-201ENST00000577781 2400 ntBASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 KRT8P17-201ENST00000453110 1448 ntBASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCUBE3Q8IX30 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 AC092368.3-202ENST00000574180 1591 ntBASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 AC023632.3-201ENST00000521633 145 ntBASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 KRT18P6-201ENST00000555540 1265 ntBASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 AC099778.1-201ENST00000568593 1911 ntBASIC21.1■□□□□ 0.97
SCUBE3Q8IX30 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.09■□□□□ 0.97
SCUBE3Q8IX30 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SCUBE3Q8IX30 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SCUBE3Q8IX30 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SCUBE3Q8IX30 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
SCUBE3Q8IX30 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SCUBE3Q8IX30 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.09■□□□□ 0.97
SCUBE3Q8IX30 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.09■□□□□ 0.97
SCUBE3Q8IX30 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC21.09■□□□□ 0.97
SCUBE3Q8IX30 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
SCUBE3Q8IX30 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.09■□□□□ 0.97
SCUBE3Q8IX30 AC060766.5-201ENST00000590539 871 ntBASIC21.09■□□□□ 0.97
SCUBE3Q8IX30 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SCUBE3Q8IX30 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SCUBE3Q8IX30 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SCUBE3Q8IX30 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SCUBE3Q8IX30 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.09■□□□□ 0.97
SCUBE3Q8IX30 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SCUBE3Q8IX30 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SCUBE3Q8IX30 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.08■□□□□ 0.97
SCUBE3Q8IX30 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SCUBE3Q8IX30 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SCUBE3Q8IX30 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.08■□□□□ 0.97
SCUBE3Q8IX30 KRT8P20-201ENST00000423953 1409 ntBASIC21.08■□□□□ 0.97
SCUBE3Q8IX30 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.08■□□□□ 0.97
SCUBE3Q8IX30 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
SCUBE3Q8IX30 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
SCUBE3Q8IX30 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SCUBE3Q8IX30 RNA5SP413-201ENST00000516373 109 ntBASIC21.08■□□□□ 0.97
SCUBE3Q8IX30 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.08■□□□□ 0.97
SCUBE3Q8IX30 PNMA6B-201ENST00000538162 1200 ntBASIC21.08■□□□□ 0.97
SCUBE3Q8IX30 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.08■□□□□ 0.97
SCUBE3Q8IX30 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
SCUBE3Q8IX30 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
SCUBE3Q8IX30 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC21.08■□□□□ 0.97
SCUBE3Q8IX30 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.08■□□□□ 0.96
SCUBE3Q8IX30 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SCUBE3Q8IX30 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SCUBE3Q8IX30 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms