Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 KRT8P20-201ENST00000423953 1409 ntBASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
CCDC60Q8IWA6 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC22.38■■□□□ 1.17
CCDC60Q8IWA6 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC22.38■■□□□ 1.17
CCDC60Q8IWA6 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC22.38■■□□□ 1.17
CCDC60Q8IWA6 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CCDC60Q8IWA6 HLA-G-202ENST00000376815 851 ntBASIC22.38■■□□□ 1.17
CCDC60Q8IWA6 HLA-G-203ENST00000376818 1127 ntBASIC22.38■■□□□ 1.17
CCDC60Q8IWA6 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC22.38■■□□□ 1.17
CCDC60Q8IWA6 AC133681.1-201ENST00000465482 601 ntBASIC22.38■■□□□ 1.17
CCDC60Q8IWA6 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC22.38■■□□□ 1.17
CCDC60Q8IWA6 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC22.38■■□□□ 1.17
CCDC60Q8IWA6 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
CCDC60Q8IWA6 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CCDC60Q8IWA6 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CCDC60Q8IWA6 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC60Q8IWA6 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC60Q8IWA6 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC22.37■■□□□ 1.17
CCDC60Q8IWA6 KRASP1-201ENST00000407852 552 ntBASIC22.37■■□□□ 1.17
CCDC60Q8IWA6 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
CCDC60Q8IWA6 RPS2P4-201ENST00000476944 856 ntBASIC22.37■■□□□ 1.17
CCDC60Q8IWA6 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC22.37■■□□□ 1.17
CCDC60Q8IWA6 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC60Q8IWA6 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC60Q8IWA6 KRT8P17-201ENST00000453110 1448 ntBASIC22.37■■□□□ 1.17
CCDC60Q8IWA6 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
CCDC60Q8IWA6 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC60Q8IWA6 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC22.36■■□□□ 1.17
CCDC60Q8IWA6 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
CCDC60Q8IWA6 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC22.36■■□□□ 1.17
CCDC60Q8IWA6 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC22.36■■□□□ 1.17
CCDC60Q8IWA6 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC22.36■■□□□ 1.17
CCDC60Q8IWA6 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC22.36■■□□□ 1.17
CCDC60Q8IWA6 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC22.36■■□□□ 1.17
CCDC60Q8IWA6 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC22.36■■□□□ 1.17
CCDC60Q8IWA6 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC22.36■■□□□ 1.17
CCDC60Q8IWA6 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC22.36■■□□□ 1.17
CCDC60Q8IWA6 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC60Q8IWA6 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC60Q8IWA6 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC22.36■■□□□ 1.17
CCDC60Q8IWA6 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC22.36■■□□□ 1.17
CCDC60Q8IWA6 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC22.36■■□□□ 1.17
CCDC60Q8IWA6 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC22.35■■□□□ 1.17
CCDC60Q8IWA6 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC60Q8IWA6 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC60Q8IWA6 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC60Q8IWA6 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC60Q8IWA6 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC22.35■■□□□ 1.17
CCDC60Q8IWA6 TK2-204ENST00000525974 1178 ntTSL 2 BASIC22.35■■□□□ 1.17
CCDC60Q8IWA6 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC22.35■■□□□ 1.17
CCDC60Q8IWA6 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC22.35■■□□□ 1.17
CCDC60Q8IWA6 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC22.35■■□□□ 1.17
CCDC60Q8IWA6 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
CCDC60Q8IWA6 Six3os1_6.1-201ENST00000620790 196 ntBASIC22.35■■□□□ 1.17
CCDC60Q8IWA6 AL121829.2-201ENST00000620908 328 ntBASIC22.35■■□□□ 1.17
CCDC60Q8IWA6 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC22.35■■□□□ 1.17
CCDC60Q8IWA6 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC60Q8IWA6 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC22.34■■□□□ 1.17
CCDC60Q8IWA6 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC60Q8IWA6 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC60Q8IWA6 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC60Q8IWA6 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC60Q8IWA6 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC22.34■■□□□ 1.17
CCDC60Q8IWA6 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC60Q8IWA6 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC60Q8IWA6 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC60Q8IWA6 AL596275.1-201ENST00000423464 877 ntBASIC22.34■■□□□ 1.17
CCDC60Q8IWA6 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC22.34■■□□□ 1.17
CCDC60Q8IWA6 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC22.34■■□□□ 1.17
CCDC60Q8IWA6 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC22.34■■□□□ 1.17
CCDC60Q8IWA6 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC22.34■■□□□ 1.17
CCDC60Q8IWA6 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC60Q8IWA6 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC60Q8IWA6 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CCDC60Q8IWA6 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC22.33■■□□□ 1.17
CCDC60Q8IWA6 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.17
CCDC60Q8IWA6 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CCDC60Q8IWA6 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CCDC60Q8IWA6 Z99916.2-201ENST00000604037 246 ntBASIC22.33■■□□□ 1.17
CCDC60Q8IWA6 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CCDC60Q8IWA6 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
CCDC60Q8IWA6 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.16
CCDC60Q8IWA6 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
CCDC60Q8IWA6 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC60Q8IWA6 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC60Q8IWA6 SMG8-203ENST00000578922 2178 ntBASIC22.32■■□□□ 1.16
CCDC60Q8IWA6 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
CCDC60Q8IWA6 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC22.32■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms