Protein–RNA interactions for Protein: Q86X40

LRRC28, Leucine-rich repeat-containing protein 28, humanhuman

Predicted RBP Predictions only

Length 367 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28Q86X40 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRRC28Q86X40 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
LRRC28Q86X40 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRRC28Q86X40 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRRC28Q86X40 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
LRRC28Q86X40 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRRC28Q86X40 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LRRC28Q86X40 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LRRC28Q86X40 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
LRRC28Q86X40 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
LRRC28Q86X40 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
LRRC28Q86X40 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.8■□□□□ 0.44
LRRC28Q86X40 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
LRRC28Q86X40 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC28Q86X40 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC28Q86X40 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC28Q86X40 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC28Q86X40 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC28Q86X40 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC28Q86X40 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC28Q86X40 AC004911.1-201ENST00000416316 871 ntBASIC17.8■□□□□ 0.44
LRRC28Q86X40 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC17.8■□□□□ 0.44
LRRC28Q86X40 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC17.8■□□□□ 0.44
LRRC28Q86X40 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC17.8■□□□□ 0.44
LRRC28Q86X40 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC17.8■□□□□ 0.44
LRRC28Q86X40 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
LRRC28Q86X40 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
LRRC28Q86X40 AC011484.1-201ENST00000377652 1995 ntBASIC17.8■□□□□ 0.44
LRRC28Q86X40 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC28Q86X40 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
LRRC28Q86X40 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC28Q86X40 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.8■□□□□ 0.44
LRRC28Q86X40 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC28Q86X40 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LRRC28Q86X40 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.79■□□□□ 0.44
LRRC28Q86X40 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
LRRC28Q86X40 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
LRRC28Q86X40 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LRRC28Q86X40 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
LRRC28Q86X40 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LRRC28Q86X40 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LRRC28Q86X40 KRT18P11-201ENST00000435214 1283 ntBASIC17.79■□□□□ 0.44
LRRC28Q86X40 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LRRC28Q86X40 SERP1-208ENST00000491660 830 ntTSL 2 BASIC17.79■□□□□ 0.44
LRRC28Q86X40 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC17.79■□□□□ 0.44
LRRC28Q86X40 AP001160.3-201ENST00000601484 763 ntBASIC17.79■□□□□ 0.44
LRRC28Q86X40 AC053503.5-201ENST00000601508 636 ntBASIC17.79■□□□□ 0.44
LRRC28Q86X40 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.79■□□□□ 0.44
LRRC28Q86X40 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LRRC28Q86X40 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LRRC28Q86X40 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
LRRC28Q86X40 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LRRC28Q86X40 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
LRRC28Q86X40 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC17.79■□□□□ 0.44
LRRC28Q86X40 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC28Q86X40 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC28Q86X40 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC17.78■□□□□ 0.44
LRRC28Q86X40 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.78■□□□□ 0.44
LRRC28Q86X40 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC28Q86X40 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
LRRC28Q86X40 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC28Q86X40 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC28Q86X40 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC28Q86X40 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC28Q86X40 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC17.78■□□□□ 0.44
LRRC28Q86X40 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC28Q86X40 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC17.78■□□□□ 0.44
LRRC28Q86X40 EEF1DP3-203ENST00000566025 782 ntBASIC17.78■□□□□ 0.44
LRRC28Q86X40 AC138907.5-202ENST00000569484 235 ntBASIC17.78■□□□□ 0.44
LRRC28Q86X40 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC28Q86X40 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC17.78■□□□□ 0.44
LRRC28Q86X40 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC17.78■□□□□ 0.44
LRRC28Q86X40 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC28Q86X40 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC28Q86X40 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC28Q86X40 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC28Q86X40 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
LRRC28Q86X40 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC28Q86X40 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
LRRC28Q86X40 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
LRRC28Q86X40 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC17.78■□□□□ 0.44
LRRC28Q86X40 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC28Q86X40 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
LRRC28Q86X40 GAS2L1P2-201ENST00000436355 1356 ntBASIC17.78■□□□□ 0.44
LRRC28Q86X40 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LRRC28Q86X40 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC17.77■□□□□ 0.44
LRRC28Q86X40 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LRRC28Q86X40 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.77■□□□□ 0.44
LRRC28Q86X40 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
LRRC28Q86X40 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LRRC28Q86X40 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LRRC28Q86X40 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LRRC28Q86X40 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LRRC28Q86X40 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.77■□□□□ 0.44
LRRC28Q86X40 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.77■□□□□ 0.44
LRRC28Q86X40 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LRRC28Q86X40 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC17.77■□□□□ 0.44
LRRC28Q86X40 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LRRC28Q86X40 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LRRC28Q86X40 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms