Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LDB1Q86U70 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LDB1Q86U70 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
LDB1Q86U70 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LDB1Q86U70 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
LDB1Q86U70 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LDB1Q86U70 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LDB1Q86U70 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LDB1Q86U70 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LDB1Q86U70 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.04■□□□□ 0.8
LDB1Q86U70 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.04■□□□□ 0.8
LDB1Q86U70 AF201337.1-201ENST00000520239 748 ntBASIC20.04■□□□□ 0.8
LDB1Q86U70 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.04■□□□□ 0.8
LDB1Q86U70 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LDB1Q86U70 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.04■□□□□ 0.8
LDB1Q86U70 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LDB1Q86U70 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LDB1Q86U70 AL691432.2-201ENST00000607222 2038 ntBASIC20.03■□□□□ 0.8
LDB1Q86U70 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
LDB1Q86U70 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LDB1Q86U70 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
LDB1Q86U70 MKRN4P-201ENST00000444706 1521 ntBASIC20.03■□□□□ 0.8
LDB1Q86U70 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LDB1Q86U70 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LDB1Q86U70 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LDB1Q86U70 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
LDB1Q86U70 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.03■□□□□ 0.8
LDB1Q86U70 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.03■□□□□ 0.8
LDB1Q86U70 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.03■□□□□ 0.8
LDB1Q86U70 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.03■□□□□ 0.8
LDB1Q86U70 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.03■□□□□ 0.8
LDB1Q86U70 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
LDB1Q86U70 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LDB1Q86U70 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LDB1Q86U70 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.02■□□□□ 0.8
LDB1Q86U70 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.02■□□□□ 0.8
LDB1Q86U70 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LDB1Q86U70 PTBP1P-201ENST00000554374 1601 ntBASIC20.02■□□□□ 0.8
LDB1Q86U70 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDB1Q86U70 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDB1Q86U70 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDB1Q86U70 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDB1Q86U70 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.02■□□□□ 0.8
LDB1Q86U70 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.02■□□□□ 0.8
LDB1Q86U70 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDB1Q86U70 AC006970.2-201ENST00000450065 779 ntBASIC20.02■□□□□ 0.8
LDB1Q86U70 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.02■□□□□ 0.8
LDB1Q86U70 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.02■□□□□ 0.8
LDB1Q86U70 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.02■□□□□ 0.8
LDB1Q86U70 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.02■□□□□ 0.8
LDB1Q86U70 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.02■□□□□ 0.8
LDB1Q86U70 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
LDB1Q86U70 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDB1Q86U70 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDB1Q86U70 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.02■□□□□ 0.79
LDB1Q86U70 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
LDB1Q86U70 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.02■□□□□ 0.79
LDB1Q86U70 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.02■□□□□ 0.79
LDB1Q86U70 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.79
LDB1Q86U70 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
LDB1Q86U70 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
LDB1Q86U70 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.01■□□□□ 0.79
LDB1Q86U70 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.01■□□□□ 0.79
LDB1Q86U70 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LDB1Q86U70 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LDB1Q86U70 AL589743.5-201ENST00000616611 1050 ntBASIC20.01■□□□□ 0.79
LDB1Q86U70 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.01■□□□□ 0.79
LDB1Q86U70 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LDB1Q86U70 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LDB1Q86U70 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LDB1Q86U70 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.01■□□□□ 0.79
LDB1Q86U70 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.01■□□□□ 0.79
LDB1Q86U70 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LDB1Q86U70 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
LDB1Q86U70 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LDB1Q86U70 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
LDB1Q86U70 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LDB1Q86U70 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LDB1Q86U70 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20■□□□□ 0.79
LDB1Q86U70 BX119927.1-201ENST00000636596 1552 ntBASIC20■□□□□ 0.79
LDB1Q86U70 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20■□□□□ 0.79
LDB1Q86U70 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20■□□□□ 0.79
LDB1Q86U70 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
LDB1Q86U70 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
LDB1Q86U70 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
LDB1Q86U70 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20■□□□□ 0.79
LDB1Q86U70 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20■□□□□ 0.79
LDB1Q86U70 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20■□□□□ 0.79
LDB1Q86U70 BX276092.2-201ENST00000417668 665 ntBASIC20■□□□□ 0.79
LDB1Q86U70 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20■□□□□ 0.79
LDB1Q86U70 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
LDB1Q86U70 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20■□□□□ 0.79
LDB1Q86U70 PPP1R14BP3-201ENST00000509033 445 ntBASIC20■□□□□ 0.79
LDB1Q86U70 AC083906.2-201ENST00000511578 360 ntBASIC20■□□□□ 0.79
LDB1Q86U70 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20■□□□□ 0.79
LDB1Q86U70 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
LDB1Q86U70 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20■□□□□ 0.79
LDB1Q86U70 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LDB1Q86U70 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
LDB1Q86U70 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms