Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC27■■□□□ 1.91
USP54Q70EL1 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC27■■□□□ 1.91
USP54Q70EL1 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC26.99■■□□□ 1.91
USP54Q70EL1 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
USP54Q70EL1 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC26.99■■□□□ 1.91
USP54Q70EL1 CALM3-202ENST00000391918 702 ntTSL 2 BASIC26.99■■□□□ 1.91
USP54Q70EL1 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC26.99■■□□□ 1.91
USP54Q70EL1 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC26.99■■□□□ 1.91
USP54Q70EL1 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC26.99■■□□□ 1.91
USP54Q70EL1 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC26.99■■□□□ 1.91
USP54Q70EL1 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
USP54Q70EL1 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC26.99■■□□□ 1.91
USP54Q70EL1 AC121338.2-201ENST00000622535 1744 ntBASIC26.99■■□□□ 1.91
USP54Q70EL1 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
USP54Q70EL1 UNC93B2-201ENST00000285383 730 ntBASIC26.98■■□□□ 1.91
USP54Q70EL1 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
USP54Q70EL1 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
USP54Q70EL1 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
USP54Q70EL1 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
USP54Q70EL1 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC26.98■■□□□ 1.91
USP54Q70EL1 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC26.98■■□□□ 1.91
USP54Q70EL1 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC26.98■■□□□ 1.91
USP54Q70EL1 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC26.98■■□□□ 1.91
USP54Q70EL1 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
USP54Q70EL1 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC26.98■■□□□ 1.91
USP54Q70EL1 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
USP54Q70EL1 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
USP54Q70EL1 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC26.98■■□□□ 1.91
USP54Q70EL1 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC26.98■■□□□ 1.91
USP54Q70EL1 TK2-213ENST00000563369 882 ntTSL 5 BASIC26.98■■□□□ 1.91
USP54Q70EL1 GLDC-219ENST00000640208 420 ntTSL 2 BASIC26.98■■□□□ 1.91
USP54Q70EL1 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
USP54Q70EL1 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC26.97■■□□□ 1.91
USP54Q70EL1 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC26.97■■□□□ 1.91
USP54Q70EL1 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC26.97■■□□□ 1.91
USP54Q70EL1 AC113347.1-201ENST00000413321 391 ntBASIC26.97■■□□□ 1.91
USP54Q70EL1 AL390955.1-201ENST00000428694 934 ntBASIC26.97■■□□□ 1.91
USP54Q70EL1 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC26.97■■□□□ 1.91
USP54Q70EL1 AP000525.1-201ENST00000608286 694 ntBASIC26.97■■□□□ 1.91
USP54Q70EL1 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC26.97■■□□□ 1.91
USP54Q70EL1 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
USP54Q70EL1 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
USP54Q70EL1 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC26.96■■□□□ 1.91
USP54Q70EL1 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
USP54Q70EL1 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC26.96■■□□□ 1.91
USP54Q70EL1 AL355355.2-201ENST00000442321 338 ntBASIC26.96■■□□□ 1.91
USP54Q70EL1 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC26.96■■□□□ 1.91
USP54Q70EL1 RBM42-202ENST00000586618 771 ntTSL 3 BASIC26.96■■□□□ 1.91
USP54Q70EL1 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC26.96■■□□□ 1.91
USP54Q70EL1 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC26.96■■□□□ 1.91
USP54Q70EL1 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC26.96■■□□□ 1.91
USP54Q70EL1 FBXW4P1-201ENST00000426721 2239 ntBASIC26.96■■□□□ 1.91
USP54Q70EL1 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
USP54Q70EL1 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC26.95■■□□□ 1.91
USP54Q70EL1 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
USP54Q70EL1 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC26.95■■□□□ 1.91
USP54Q70EL1 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC26.95■■□□□ 1.91
USP54Q70EL1 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC26.95■■□□□ 1.91
USP54Q70EL1 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC26.95■■□□□ 1.9
USP54Q70EL1 HLA-G-202ENST00000376815 851 ntBASIC26.95■■□□□ 1.9
USP54Q70EL1 HLA-G-203ENST00000376818 1127 ntBASIC26.95■■□□□ 1.9
USP54Q70EL1 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC26.95■■□□□ 1.9
USP54Q70EL1 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC26.95■■□□□ 1.9
USP54Q70EL1 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
USP54Q70EL1 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC26.94■■□□□ 1.9
USP54Q70EL1 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
USP54Q70EL1 MMP23A-201ENST00000234610 1017 ntBASIC26.94■■□□□ 1.9
USP54Q70EL1 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC26.94■■□□□ 1.9
USP54Q70EL1 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
USP54Q70EL1 AP002982.1-201ENST00000492365 877 ntBASIC26.94■■□□□ 1.9
USP54Q70EL1 DUT-205ENST00000558813 769 ntTSL 2 BASIC26.94■■□□□ 1.9
USP54Q70EL1 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC26.94■■□□□ 1.9
USP54Q70EL1 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC26.94■■□□□ 1.9
USP54Q70EL1 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC26.93■■□□□ 1.9
USP54Q70EL1 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
USP54Q70EL1 AC005229.4-201ENST00000610085 2198 ntBASIC26.93■■□□□ 1.9
USP54Q70EL1 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
USP54Q70EL1 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
USP54Q70EL1 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
USP54Q70EL1 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC26.93■■□□□ 1.9
USP54Q70EL1 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC26.93■■□□□ 1.9
USP54Q70EL1 MESTP1-201ENST00000404287 994 ntBASIC26.93■■□□□ 1.9
USP54Q70EL1 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC26.93■■□□□ 1.9
USP54Q70EL1 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC26.93■■□□□ 1.9
USP54Q70EL1 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC26.92■■□□□ 1.9
USP54Q70EL1 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
USP54Q70EL1 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC26.92■■□□□ 1.9
USP54Q70EL1 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
USP54Q70EL1 DGCR10-201ENST00000609839 495 ntBASIC26.92■■□□□ 1.9
USP54Q70EL1 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC26.92■■□□□ 1.9
USP54Q70EL1 ERF-202ENST00000440177 2032 ntTSL 2 BASIC26.92■■□□□ 1.9
USP54Q70EL1 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC26.92■■□□□ 1.9
USP54Q70EL1 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
USP54Q70EL1 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
USP54Q70EL1 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC26.91■■□□□ 1.9
USP54Q70EL1 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
USP54Q70EL1 AC116351.2-201ENST00000606540 1585 ntBASIC26.91■■□□□ 1.9
USP54Q70EL1 KRT8P17-201ENST00000453110 1448 ntBASIC26.91■■□□□ 1.9
USP54Q70EL1 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC26.91■■□□□ 1.9
USP54Q70EL1 TMPOP1-202ENST00000424642 1267 ntBASIC26.91■■□□□ 1.9
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms