Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.42■□□□□ 0.86
USP39Q53GS9 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP39Q53GS9 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP39Q53GS9 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.41■□□□□ 0.86
USP39Q53GS9 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
USP39Q53GS9 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.41■□□□□ 0.86
USP39Q53GS9 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP39Q53GS9 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.41■□□□□ 0.86
USP39Q53GS9 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
USP39Q53GS9 AC087499.1-201ENST00000418141 1075 ntBASIC20.41■□□□□ 0.86
USP39Q53GS9 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.41■□□□□ 0.86
USP39Q53GS9 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.41■□□□□ 0.86
USP39Q53GS9 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
USP39Q53GS9 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.41■□□□□ 0.86
USP39Q53GS9 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.41■□□□□ 0.86
USP39Q53GS9 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.41■□□□□ 0.86
USP39Q53GS9 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.41■□□□□ 0.86
USP39Q53GS9 AL356652.1-201ENST00000615962 565 ntBASIC20.41■□□□□ 0.86
USP39Q53GS9 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP39Q53GS9 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP39Q53GS9 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
USP39Q53GS9 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.41■□□□□ 0.86
USP39Q53GS9 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
USP39Q53GS9 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP39Q53GS9 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP39Q53GS9 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC20.41■□□□□ 0.86
USP39Q53GS9 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP39Q53GS9 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP39Q53GS9 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
USP39Q53GS9 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP39Q53GS9 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP39Q53GS9 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USP39Q53GS9 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP39Q53GS9 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
USP39Q53GS9 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.4■□□□□ 0.86
USP39Q53GS9 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USP39Q53GS9 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.4■□□□□ 0.86
USP39Q53GS9 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
USP39Q53GS9 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.4■□□□□ 0.86
USP39Q53GS9 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.4■□□□□ 0.86
USP39Q53GS9 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
USP39Q53GS9 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
USP39Q53GS9 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
USP39Q53GS9 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
USP39Q53GS9 AL024507.2-201ENST00000606070 2574 ntBASIC20.4■□□□□ 0.86
USP39Q53GS9 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
USP39Q53GS9 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
USP39Q53GS9 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
USP39Q53GS9 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
USP39Q53GS9 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.39■□□□□ 0.86
USP39Q53GS9 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.39■□□□□ 0.86
USP39Q53GS9 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
USP39Q53GS9 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.39■□□□□ 0.85
USP39Q53GS9 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.39■□□□□ 0.85
USP39Q53GS9 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
USP39Q53GS9 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
USP39Q53GS9 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP39Q53GS9 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP39Q53GS9 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
USP39Q53GS9 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP39Q53GS9 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP39Q53GS9 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.39■□□□□ 0.85
USP39Q53GS9 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.39■□□□□ 0.85
USP39Q53GS9 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.39■□□□□ 0.85
USP39Q53GS9 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.39■□□□□ 0.85
USP39Q53GS9 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.39■□□□□ 0.85
USP39Q53GS9 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
USP39Q53GS9 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.39■□□□□ 0.85
USP39Q53GS9 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP39Q53GS9 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP39Q53GS9 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP39Q53GS9 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP39Q53GS9 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP39Q53GS9 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP39Q53GS9 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP39Q53GS9 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
USP39Q53GS9 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USP39Q53GS9 PENK-204ENST00000518770 863 ntTSL 2 BASIC20.38■□□□□ 0.85
USP39Q53GS9 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.38■□□□□ 0.85
USP39Q53GS9 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.38■□□□□ 0.85
USP39Q53GS9 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.38■□□□□ 0.85
USP39Q53GS9 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP39Q53GS9 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP39Q53GS9 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
USP39Q53GS9 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP39Q53GS9 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
USP39Q53GS9 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC20.37■□□□□ 0.85
USP39Q53GS9 TSPY15P-201ENST00000457163 923 ntBASIC20.37■□□□□ 0.85
USP39Q53GS9 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.37■□□□□ 0.85
USP39Q53GS9 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.37■□□□□ 0.85
USP39Q53GS9 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.37■□□□□ 0.85
USP39Q53GS9 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.37■□□□□ 0.85
USP39Q53GS9 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP39Q53GS9 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.37■□□□□ 0.85
USP39Q53GS9 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.37■□□□□ 0.85
USP39Q53GS9 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.37■□□□□ 0.85
USP39Q53GS9 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP39Q53GS9 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.36■□□□□ 0.85
USP39Q53GS9 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP39Q53GS9 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms