Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC12.57□□□□□ -0.4
HSPG2P98160 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
HSPG2P98160 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
HSPG2P98160 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HSPG2P98160 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HSPG2P98160 AC023632.3-201ENST00000521633 145 ntBASIC12.56□□□□□ -0.4
HSPG2P98160 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
HSPG2P98160 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
HSPG2P98160 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HSPG2P98160 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
HSPG2P98160 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC12.56□□□□□ -0.4
HSPG2P98160 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HSPG2P98160 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC12.56□□□□□ -0.4
HSPG2P98160 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
HSPG2P98160 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC12.56□□□□□ -0.4
HSPG2P98160 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
HSPG2P98160 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HSPG2P98160 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC12.56□□□□□ -0.4
HSPG2P98160 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC12.56□□□□□ -0.4
HSPG2P98160 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC12.56□□□□□ -0.4
HSPG2P98160 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HSPG2P98160 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
HSPG2P98160 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HSPG2P98160 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HSPG2P98160 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC12.56□□□□□ -0.4
HSPG2P98160 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
HSPG2P98160 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
HSPG2P98160 AC069148.1-201ENST00000608741 768 ntBASIC12.56□□□□□ -0.4
HSPG2P98160 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC12.56□□□□□ -0.4
HSPG2P98160 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HSPG2P98160 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
HSPG2P98160 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
HSPG2P98160 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
HSPG2P98160 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HSPG2P98160 KSR1P1-201ENST00000446298 240 ntBASIC12.55□□□□□ -0.4
HSPG2P98160 AC104692.2-201ENST00000603054 253 ntBASIC12.55□□□□□ -0.4
HSPG2P98160 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC12.55□□□□□ -0.4
HSPG2P98160 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HSPG2P98160 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HSPG2P98160 STX5-203ENST00000394690 1568 ntTSL 5 BASIC12.55□□□□□ -0.4
HSPG2P98160 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HSPG2P98160 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HSPG2P98160 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
HSPG2P98160 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HSPG2P98160 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC12.55□□□□□ -0.4
HSPG2P98160 GPX4-207ENST00000589115 812 ntTSL 2 BASIC12.55□□□□□ -0.4
HSPG2P98160 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HSPG2P98160 AC083849.1-201ENST00000615227 514 ntBASIC12.55□□□□□ -0.4
HSPG2P98160 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HSPG2P98160 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HSPG2P98160 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC12.55□□□□□ -0.4
HSPG2P98160 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC12.55□□□□□ -0.4
HSPG2P98160 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC12.55□□□□□ -0.4
HSPG2P98160 DFFB-212ENST00000625756 649 ntTSL 5 BASIC12.55□□□□□ -0.4
HSPG2P98160 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HSPG2P98160 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HSPG2P98160 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
HSPG2P98160 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HSPG2P98160 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC12.55□□□□□ -0.4
HSPG2P98160 C2orf69P3-201ENST00000565542 1120 ntBASIC12.55□□□□□ -0.4
HSPG2P98160 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
HSPG2P98160 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC12.55□□□□□ -0.4
HSPG2P98160 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
HSPG2P98160 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HSPG2P98160 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC12.55□□□□□ -0.4
HSPG2P98160 EXOC3-AS1-202ENST00000623673 1663 ntBASIC12.54□□□□□ -0.4
HSPG2P98160 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HSPG2P98160 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HSPG2P98160 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HSPG2P98160 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HSPG2P98160 AC097488.1-201ENST00000507834 756 ntBASIC12.54□□□□□ -0.4
HSPG2P98160 VENTXP5-201ENST00000523979 775 ntBASIC12.54□□□□□ -0.4
HSPG2P98160 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC12.54□□□□□ -0.4
HSPG2P98160 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HSPG2P98160 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC12.54□□□□□ -0.4
HSPG2P98160 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HSPG2P98160 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HSPG2P98160 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC12.54□□□□□ -0.4
HSPG2P98160 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC12.54□□□□□ -0.4
HSPG2P98160 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC12.54□□□□□ -0.4
HSPG2P98160 AC008622.2-201ENST00000617006 1229 ntBASIC12.54□□□□□ -0.4
HSPG2P98160 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC12.54□□□□□ -0.4
HSPG2P98160 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC12.54□□□□□ -0.4
HSPG2P98160 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HSPG2P98160 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
HSPG2P98160 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HSPG2P98160 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HSPG2P98160 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC12.54□□□□□ -0.4
HSPG2P98160 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HSPG2P98160 MFAP1P1-201ENST00000442257 1255 ntBASIC12.54□□□□□ -0.4
HSPG2P98160 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HSPG2P98160 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HSPG2P98160 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
HSPG2P98160 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HSPG2P98160 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC12.53□□□□□ -0.4
HSPG2P98160 KRT8P36-201ENST00000489121 1440 ntBASIC12.53□□□□□ -0.4
HSPG2P98160 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
HSPG2P98160 SKP2-204ENST00000508514 821 ntTSL 3 BASIC12.53□□□□□ -0.4
HSPG2P98160 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
HSPG2P98160 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms