Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
H3F3AP84243 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
H3F3AP84243 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
H3F3AP84243 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
H3F3AP84243 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
H3F3AP84243 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC17.95■□□□□ 0.46
H3F3AP84243 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
H3F3AP84243 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.95■□□□□ 0.46
H3F3AP84243 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
H3F3AP84243 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.95■□□□□ 0.46
H3F3AP84243 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
H3F3AP84243 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
H3F3AP84243 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.95■□□□□ 0.46
H3F3AP84243 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
H3F3AP84243 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
H3F3AP84243 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC17.95■□□□□ 0.46
H3F3AP84243 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
H3F3AP84243 KRT8P17-201ENST00000453110 1448 ntBASIC17.95■□□□□ 0.46
H3F3AP84243 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC17.95■□□□□ 0.46
H3F3AP84243 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
H3F3AP84243 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
H3F3AP84243 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
H3F3AP84243 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
H3F3AP84243 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
H3F3AP84243 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
H3F3AP84243 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC17.94■□□□□ 0.46
H3F3AP84243 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.94■□□□□ 0.46
H3F3AP84243 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC17.94■□□□□ 0.46
H3F3AP84243 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
H3F3AP84243 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
H3F3AP84243 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC17.94■□□□□ 0.46
H3F3AP84243 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
H3F3AP84243 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
H3F3AP84243 APTR-205ENST00000447009 902 ntTSL 2 BASIC17.94■□□□□ 0.46
H3F3AP84243 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.94■□□□□ 0.46
H3F3AP84243 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.94■□□□□ 0.46
H3F3AP84243 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
H3F3AP84243 AL031963.3-201ENST00000606441 850 ntBASIC17.94■□□□□ 0.46
H3F3AP84243 KRT8P20-201ENST00000423953 1409 ntBASIC17.94■□□□□ 0.46
H3F3AP84243 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
H3F3AP84243 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC17.94■□□□□ 0.46
H3F3AP84243 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC17.94■□□□□ 0.46
H3F3AP84243 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
H3F3AP84243 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
H3F3AP84243 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC17.94■□□□□ 0.46
H3F3AP84243 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC17.94■□□□□ 0.46
H3F3AP84243 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
H3F3AP84243 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
H3F3AP84243 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
H3F3AP84243 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC17.94■□□□□ 0.46
H3F3AP84243 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
H3F3AP84243 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
H3F3AP84243 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
H3F3AP84243 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC17.93■□□□□ 0.46
H3F3AP84243 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
H3F3AP84243 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
H3F3AP84243 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
H3F3AP84243 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC17.93■□□□□ 0.46
H3F3AP84243 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
H3F3AP84243 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
H3F3AP84243 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC17.93■□□□□ 0.46
H3F3AP84243 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
H3F3AP84243 AC060766.5-201ENST00000590539 871 ntBASIC17.93■□□□□ 0.46
H3F3AP84243 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
H3F3AP84243 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC17.93■□□□□ 0.46
H3F3AP84243 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
H3F3AP84243 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
H3F3AP84243 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
H3F3AP84243 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
H3F3AP84243 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
H3F3AP84243 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
H3F3AP84243 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
H3F3AP84243 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
H3F3AP84243 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
H3F3AP84243 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
H3F3AP84243 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
H3F3AP84243 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
H3F3AP84243 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
H3F3AP84243 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
H3F3AP84243 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
H3F3AP84243 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
H3F3AP84243 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
H3F3AP84243 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC17.92■□□□□ 0.46
H3F3AP84243 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
H3F3AP84243 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.92■□□□□ 0.46
H3F3AP84243 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
H3F3AP84243 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
H3F3AP84243 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
H3F3AP84243 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
H3F3AP84243 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
H3F3AP84243 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
H3F3AP84243 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
H3F3AP84243 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
H3F3AP84243 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC17.92■□□□□ 0.46
H3F3AP84243 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
H3F3AP84243 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.92■□□□□ 0.46
H3F3AP84243 AC005829.2-201ENST00000571422 1056 ntBASIC17.92■□□□□ 0.46
H3F3AP84243 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC17.92■□□□□ 0.46
H3F3AP84243 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
H3F3AP84243 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms