Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC16.15■□□□□ 0.18
CX3CL1P78423 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CL1P78423 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC16.14■□□□□ 0.17
CX3CL1P78423 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CL1P78423 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
CX3CL1P78423 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CL1P78423 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC16.14■□□□□ 0.17
CX3CL1P78423 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CL1P78423 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CL1P78423 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CL1P78423 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CL1P78423 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC16.14■□□□□ 0.17
CX3CL1P78423 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CL1P78423 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC16.14■□□□□ 0.17
CX3CL1P78423 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC16.14■□□□□ 0.17
CX3CL1P78423 AC093787.1-201ENST00000450396 207 ntBASIC16.14■□□□□ 0.17
CX3CL1P78423 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CL1P78423 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
CX3CL1P78423 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC16.14■□□□□ 0.17
CX3CL1P78423 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC16.14■□□□□ 0.17
CX3CL1P78423 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC16.14■□□□□ 0.17
CX3CL1P78423 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CX3CL1P78423 AL356652.1-201ENST00000615962 565 ntBASIC16.14■□□□□ 0.17
CX3CL1P78423 AL050303.2-201ENST00000619798 666 ntBASIC16.14■□□□□ 0.17
CX3CL1P78423 AP005212.1-201ENST00000581547 1997 ntBASIC16.14■□□□□ 0.17
CX3CL1P78423 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CL1P78423 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CL1P78423 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC16.14■□□□□ 0.17
CX3CL1P78423 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CL1P78423 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CL1P78423 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CL1P78423 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CL1P78423 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CL1P78423 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CX3CL1P78423 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CX3CL1P78423 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CL1P78423 AC010980.2-201ENST00000587099 1412 ntBASIC16.13■□□□□ 0.17
CX3CL1P78423 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CL1P78423 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CL1P78423 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CL1P78423 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CL1P78423 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CL1P78423 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CL1P78423 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CL1P78423 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC16.13■□□□□ 0.17
CX3CL1P78423 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC16.13■□□□□ 0.17
CX3CL1P78423 AF201337.1-201ENST00000520239 748 ntBASIC16.13■□□□□ 0.17
CX3CL1P78423 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC16.13■□□□□ 0.17
CX3CL1P78423 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CL1P78423 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CL1P78423 AC020907.5-201ENST00000624372 1936 ntBASIC16.13■□□□□ 0.17
CX3CL1P78423 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC16.13■□□□□ 0.17
CX3CL1P78423 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC16.13■□□□□ 0.17
CX3CL1P78423 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC16.13■□□□□ 0.17
CX3CL1P78423 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CL1P78423 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CL1P78423 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CL1P78423 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CX3CL1P78423 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
CX3CL1P78423 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CX3CL1P78423 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC16.12■□□□□ 0.17
CX3CL1P78423 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC16.12■□□□□ 0.17
CX3CL1P78423 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
CX3CL1P78423 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CX3CL1P78423 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CX3CL1P78423 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CX3CL1P78423 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CX3CL1P78423 AC092720.2-201ENST00000602388 1665 ntBASIC16.12■□□□□ 0.17
CX3CL1P78423 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC16.12■□□□□ 0.17
CX3CL1P78423 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
CX3CL1P78423 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC16.12■□□□□ 0.17
CX3CL1P78423 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CX3CL1P78423 KRT18P68-201ENST00000392293 1000 ntBASIC16.12■□□□□ 0.17
CX3CL1P78423 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC16.12■□□□□ 0.17
CX3CL1P78423 AC105036.2-201ENST00000569468 176 ntBASIC16.12■□□□□ 0.17
CX3CL1P78423 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC16.12■□□□□ 0.17
CX3CL1P78423 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC16.12■□□□□ 0.17
CX3CL1P78423 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC16.12■□□□□ 0.17
CX3CL1P78423 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CX3CL1P78423 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
CX3CL1P78423 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC16.12■□□□□ 0.17
CX3CL1P78423 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CX3CL1P78423 GABARAPL3-202ENST00000624044 1851 ntBASIC16.12■□□□□ 0.17
CX3CL1P78423 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CX3CL1P78423 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CX3CL1P78423 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
CX3CL1P78423 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC16.11■□□□□ 0.17
CX3CL1P78423 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CX3CL1P78423 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CX3CL1P78423 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CX3CL1P78423 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC16.11■□□□□ 0.17
CX3CL1P78423 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CX3CL1P78423 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC16.11■□□□□ 0.17
CX3CL1P78423 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CX3CL1P78423 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CX3CL1P78423 AL355472.2-201ENST00000422958 438 ntBASIC16.11■□□□□ 0.17
CX3CL1P78423 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC16.11■□□□□ 0.17
CX3CL1P78423 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CX3CL1P78423 PPP1R14BP3-201ENST00000509033 445 ntBASIC16.11■□□□□ 0.17
CX3CL1P78423 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms