Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
UBA52P62987 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.23■□□□□ 0.35
UBA52P62987 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.23■□□□□ 0.35
UBA52P62987 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
UBA52P62987 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
UBA52P62987 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
UBA52P62987 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
UBA52P62987 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC17.23■□□□□ 0.35
UBA52P62987 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC17.23■□□□□ 0.35
UBA52P62987 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
UBA52P62987 BRI3-207ENST00000539286 699 ntTSL 2 BASIC17.23■□□□□ 0.35
UBA52P62987 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
UBA52P62987 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
UBA52P62987 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC17.23■□□□□ 0.35
UBA52P62987 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
UBA52P62987 PARP1-210ENST00000629232 477 ntTSL 5 BASIC17.23■□□□□ 0.35
UBA52P62987 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
UBA52P62987 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
UBA52P62987 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
UBA52P62987 AC116562.4-201ENST00000641316 2276 ntBASIC17.23■□□□□ 0.35
UBA52P62987 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
UBA52P62987 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
UBA52P62987 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.23■□□□□ 0.35
UBA52P62987 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
UBA52P62987 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.23■□□□□ 0.35
UBA52P62987 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
UBA52P62987 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
UBA52P62987 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UBA52P62987 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UBA52P62987 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UBA52P62987 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC17.22■□□□□ 0.35
UBA52P62987 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
UBA52P62987 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
UBA52P62987 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
UBA52P62987 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UBA52P62987 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UBA52P62987 AL138781.1-201ENST00000566567 1274 ntBASIC17.22■□□□□ 0.35
UBA52P62987 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC17.22■□□□□ 0.35
UBA52P62987 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC17.22■□□□□ 0.35
UBA52P62987 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.22■□□□□ 0.35
UBA52P62987 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UBA52P62987 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.22■□□□□ 0.35
UBA52P62987 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
UBA52P62987 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
UBA52P62987 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC17.22■□□□□ 0.35
UBA52P62987 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UBA52P62987 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
UBA52P62987 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
UBA52P62987 MFF-207ENST00000409565 1548 ntTSL 2 BASIC17.21■□□□□ 0.35
UBA52P62987 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
UBA52P62987 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
UBA52P62987 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
UBA52P62987 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
UBA52P62987 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
UBA52P62987 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
UBA52P62987 AP000974.1-201ENST00000623909 2387 ntBASIC17.21■□□□□ 0.35
UBA52P62987 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
UBA52P62987 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
UBA52P62987 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
UBA52P62987 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.21■□□□□ 0.35
UBA52P62987 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
UBA52P62987 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC17.21■□□□□ 0.35
UBA52P62987 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
UBA52P62987 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
UBA52P62987 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
UBA52P62987 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
UBA52P62987 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
UBA52P62987 RGMA-211ENST00000557420 989 ntTSL 3 BASIC17.21■□□□□ 0.35
UBA52P62987 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.21■□□□□ 0.35
UBA52P62987 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC17.21■□□□□ 0.35
UBA52P62987 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
UBA52P62987 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC17.21■□□□□ 0.35
UBA52P62987 AC066615.1-201ENST00000640911 628 ntBASIC17.21■□□□□ 0.35
UBA52P62987 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.35
UBA52P62987 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
UBA52P62987 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC17.21■□□□□ 0.35
UBA52P62987 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
UBA52P62987 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
UBA52P62987 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
UBA52P62987 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
UBA52P62987 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
UBA52P62987 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
UBA52P62987 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
UBA52P62987 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.21■□□□□ 0.34
UBA52P62987 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
UBA52P62987 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
UBA52P62987 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC17.2■□□□□ 0.34
UBA52P62987 AC027702.1-201ENST00000563810 1770 ntBASIC17.2■□□□□ 0.34
UBA52P62987 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
UBA52P62987 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
UBA52P62987 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
UBA52P62987 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.2■□□□□ 0.34
UBA52P62987 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
UBA52P62987 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.2■□□□□ 0.34
UBA52P62987 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC17.2■□□□□ 0.34
UBA52P62987 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC17.2■□□□□ 0.34
UBA52P62987 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
UBA52P62987 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.2■□□□□ 0.34
UBA52P62987 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC17.2■□□□□ 0.34
UBA52P62987 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms