Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
FOXA1P55317 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
FOXA1P55317 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
FOXA1P55317 PTBP1P-201ENST00000554374 1601 ntBASIC19.43■□□□□ 0.7
FOXA1P55317 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
FOXA1P55317 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.43■□□□□ 0.7
FOXA1P55317 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
FOXA1P55317 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.43■□□□□ 0.7
FOXA1P55317 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
FOXA1P55317 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.43■□□□□ 0.7
FOXA1P55317 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
FOXA1P55317 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
FOXA1P55317 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.43■□□□□ 0.7
FOXA1P55317 PGM5P4-201ENST00000421970 445 ntBASIC19.43■□□□□ 0.7
FOXA1P55317 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
FOXA1P55317 AC007322.4-201ENST00000509611 723 ntBASIC19.43■□□□□ 0.7
FOXA1P55317 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
FOXA1P55317 MFSD11-216ENST00000590393 1141 ntBASIC19.43■□□□□ 0.7
FOXA1P55317 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
FOXA1P55317 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
FOXA1P55317 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
FOXA1P55317 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.43■□□□□ 0.7
FOXA1P55317 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXA1P55317 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXA1P55317 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXA1P55317 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.42■□□□□ 0.7
FOXA1P55317 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.42■□□□□ 0.7
FOXA1P55317 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXA1P55317 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXA1P55317 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
FOXA1P55317 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.42■□□□□ 0.7
FOXA1P55317 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
FOXA1P55317 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.42■□□□□ 0.7
FOXA1P55317 AC013268.1-206ENST00000638368 961 ntBASIC19.42■□□□□ 0.7
FOXA1P55317 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.42■□□□□ 0.7
FOXA1P55317 AC112229.1-201ENST00000639295 961 ntBASIC19.42■□□□□ 0.7
FOXA1P55317 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXA1P55317 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.42■□□□□ 0.7
FOXA1P55317 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXA1P55317 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.42■□□□□ 0.7
FOXA1P55317 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXA1P55317 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.42■□□□□ 0.7
FOXA1P55317 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
FOXA1P55317 TREX1-205ENST00000625293 1783 ntBASIC19.42■□□□□ 0.7
FOXA1P55317 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXA1P55317 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXA1P55317 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
FOXA1P55317 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXA1P55317 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXA1P55317 KRT18P5-201ENST00000436075 1291 ntBASIC19.41■□□□□ 0.7
FOXA1P55317 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.41■□□□□ 0.7
FOXA1P55317 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
FOXA1P55317 AL162412.1-201ENST00000567129 965 ntBASIC19.41■□□□□ 0.7
FOXA1P55317 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
FOXA1P55317 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.41■□□□□ 0.7
FOXA1P55317 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXA1P55317 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.41■□□□□ 0.7
FOXA1P55317 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.41■□□□□ 0.7
FOXA1P55317 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.41■□□□□ 0.7
FOXA1P55317 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXA1P55317 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXA1P55317 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
FOXA1P55317 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXA1P55317 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
FOXA1P55317 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXA1P55317 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.4■□□□□ 0.7
FOXA1P55317 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXA1P55317 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXA1P55317 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXA1P55317 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXA1P55317 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.4■□□□□ 0.7
FOXA1P55317 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.4■□□□□ 0.7
FOXA1P55317 CNN2P6-201ENST00000439038 900 ntBASIC19.4■□□□□ 0.7
FOXA1P55317 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.4■□□□□ 0.7
FOXA1P55317 AC137761.2-201ENST00000561729 223 ntBASIC19.4■□□□□ 0.7
FOXA1P55317 AC145350.3-201ENST00000569033 163 ntBASIC19.4■□□□□ 0.7
FOXA1P55317 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.4■□□□□ 0.7
FOXA1P55317 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.4■□□□□ 0.7
FOXA1P55317 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXA1P55317 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXA1P55317 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.4■□□□□ 0.7
FOXA1P55317 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
FOXA1P55317 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
FOXA1P55317 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXA1P55317 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXA1P55317 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
FOXA1P55317 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
FOXA1P55317 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
FOXA1P55317 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
FOXA1P55317 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
FOXA1P55317 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
FOXA1P55317 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
FOXA1P55317 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
FOXA1P55317 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
FOXA1P55317 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.39■□□□□ 0.69
FOXA1P55317 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.39■□□□□ 0.69
FOXA1P55317 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.39■□□□□ 0.69
FOXA1P55317 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
FOXA1P55317 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
FOXA1P55317 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms