Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.78
LIMK1P53667 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.89■□□□□ 0.77
LIMK1P53667 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMK1P53667 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LIMK1P53667 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.89■□□□□ 0.77
LIMK1P53667 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LIMK1P53667 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMK1P53667 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMK1P53667 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.89■□□□□ 0.77
LIMK1P53667 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
LIMK1P53667 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.89■□□□□ 0.77
LIMK1P53667 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMK1P53667 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LIMK1P53667 AC104076.2-201ENST00000448912 469 ntBASIC19.89■□□□□ 0.77
LIMK1P53667 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.89■□□□□ 0.77
LIMK1P53667 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.89■□□□□ 0.77
LIMK1P53667 AC116050.2-201ENST00000612102 1779 ntBASIC19.89■□□□□ 0.77
LIMK1P53667 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMK1P53667 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LIMK1P53667 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.88■□□□□ 0.77
LIMK1P53667 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMK1P53667 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.88■□□□□ 0.77
LIMK1P53667 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMK1P53667 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMK1P53667 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMK1P53667 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.88■□□□□ 0.77
LIMK1P53667 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMK1P53667 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMK1P53667 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.88■□□□□ 0.77
LIMK1P53667 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMK1P53667 FITM1-202ENST00000559294 800 ntBASIC19.88■□□□□ 0.77
LIMK1P53667 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.88■□□□□ 0.77
LIMK1P53667 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.88■□□□□ 0.77
LIMK1P53667 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMK1P53667 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMK1P53667 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMK1P53667 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMK1P53667 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMK1P53667 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.87■□□□□ 0.77
LIMK1P53667 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.87■□□□□ 0.77
LIMK1P53667 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
LIMK1P53667 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIMK1P53667 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMK1P53667 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMK1P53667 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
LIMK1P53667 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMK1P53667 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.87■□□□□ 0.77
LIMK1P53667 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMK1P53667 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMK1P53667 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMK1P53667 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.87■□□□□ 0.77
LIMK1P53667 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19.87■□□□□ 0.77
LIMK1P53667 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.87■□□□□ 0.77
LIMK1P53667 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.87■□□□□ 0.77
LIMK1P53667 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
LIMK1P53667 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMK1P53667 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
LIMK1P53667 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC19.87■□□□□ 0.77
LIMK1P53667 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.87■□□□□ 0.77
LIMK1P53667 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LIMK1P53667 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LIMK1P53667 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.87■□□□□ 0.77
LIMK1P53667 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
LIMK1P53667 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMK1P53667 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMK1P53667 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMK1P53667 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMK1P53667 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
LIMK1P53667 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LIMK1P53667 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
LIMK1P53667 AC087742.1-201ENST00000575880 1738 ntBASIC19.86■□□□□ 0.77
LIMK1P53667 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMK1P53667 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.86■□□□□ 0.77
LIMK1P53667 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.86■□□□□ 0.77
LIMK1P53667 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.86■□□□□ 0.77
LIMK1P53667 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.86■□□□□ 0.77
LIMK1P53667 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC19.86■□□□□ 0.77
LIMK1P53667 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
LIMK1P53667 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMK1P53667 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LIMK1P53667 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LIMK1P53667 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.85■□□□□ 0.77
LIMK1P53667 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMK1P53667 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMK1P53667 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
LIMK1P53667 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMK1P53667 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.85■□□□□ 0.77
LIMK1P53667 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LIMK1P53667 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LIMK1P53667 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMK1P53667 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.85■□□□□ 0.77
LIMK1P53667 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMK1P53667 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.85■□□□□ 0.77
LIMK1P53667 AC010947.1-201ENST00000623454 693 ntBASIC19.85■□□□□ 0.77
LIMK1P53667 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
LIMK1P53667 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMK1P53667 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.85■□□□□ 0.77
LIMK1P53667 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
LIMK1P53667 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.85■□□□□ 0.77
LIMK1P53667 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms