Protein–RNA interactions for Protein: P33202

UFD4, Ubiquitin fusion degradation protein 4, yeastyeast

Predictions only

Length 1,483 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UFD4P33202 snR79snR79 84 nt-1.39□□□□□ -2.63
UFD4P33202 YMR075C-AYMR075C-A 366 nt-1.39□□□□□ -2.63
UFD4P33202 PET20YPL159C 762 nt-1.39□□□□□ -2.63
UFD4P33202 IPP1YBR011C 864 nt-1.4□□□□□ -2.63
UFD4P33202 YAP6YDR259C 1152 nt-1.41□□□□□ -2.63
UFD4P33202 YJL086CYJL086C 369 nt-1.41□□□□□ -2.63
UFD4P33202 YNL067W-BYNL067W-B 141 nt-1.41□□□□□ -2.63
UFD4P33202 RSM23YGL129C 1353 nt-1.41□□□□□ -2.64
UFD4P33202 SUS1YBR111W-A 291 nt-1.42□□□□□ -2.64
UFD4P33202 UBS1YBR165W 834 nt-1.42□□□□□ -2.64
UFD4P33202 SDS22YKL193C 1017 nt-1.43□□□□□ -2.64
UFD4P33202 YOR015WYOR015W 360 nt-1.43□□□□□ -2.64
UFD4P33202 SPO21YOL091W 1830 nt-1.43□□□□□ -2.64
UFD4P33202 SEM1YDR363W-A 270 nt-1.43□□□□□ -2.64
UFD4P33202 QCR7YDR529C 384 nt-1.43□□□□□ -2.64
UFD4P33202 YER138W-AYER138W-A 105 nt-1.43□□□□□ -2.64
UFD4P33202 15S_rRNA15S_rRNA 1649 nt-1.44□□□□□ -2.64
UFD4P33202 YER158W-AYER158W-A 216 nt-1.44□□□□□ -2.64
UFD4P33202 ECL1YGR146C 636 nt-1.44□□□□□ -2.64
UFD4P33202 snR24snR24 89 nt-1.44□□□□□ -2.64
UFD4P33202 YJL135WYJL135W 318 nt-1.45□□□□□ -2.64
UFD4P33202 GRX5YPL059W 453 nt-1.45□□□□□ -2.64
UFD4P33202 YHL046W-AYHL046W-A 327 nt-1.46□□□□□ -2.64
UFD4P33202 YLL006W-AYLL006W-A 177 nt-1.46□□□□□ -2.64
UFD4P33202 IRC2YDR112W 309 nt-1.48□□□□□ -2.65
UFD4P33202 THG1YGR024C 714 nt-1.48□□□□□ -2.65
UFD4P33202 YIL071W-AYIL071W-A 477 nt-1.49□□□□□ -2.65
UFD4P33202 YLR287CYLR287C 1068 nt-1.49□□□□□ -2.65
UFD4P33202 YNL319WYNL319W 441 nt-1.49□□□□□ -2.65
UFD4P33202 tN(GUU)QtN(GUU)Q 71 nt-1.5□□□□□ -2.65
UFD4P33202 YCR024C-BYCR024C-B 267 nt-1.5□□□□□ -2.65
UFD4P33202 PSF2YJL072C 642 nt-1.51□□□□□ -2.65
UFD4P33202 RPS25BYLR333C 327 nt-1.51□□□□□ -2.65
UFD4P33202 YMR158W-BYMR158W-B 321 nt-1.51□□□□□ -2.65
UFD4P33202 YML007C-AYML007C-A 111 nt-1.53□□□□□ -2.65
UFD4P33202 PBI2YNL015W 228 nt-1.53□□□□□ -2.65
UFD4P33202 YKL068W-AYKL068W-A 237 nt-1.54□□□□□ -2.66
UFD4P33202 YDL007C-AYDL007C-A 258 nt-1.55□□□□□ -2.66
UFD4P33202 tT(UGU)Q1tT(UGU)Q1 76 nt-1.56□□□□□ -2.66
UFD4P33202 COX7YMR256C 183 nt-1.56□□□□□ -2.66
UFD4P33202 LSM4YER112W 564 nt-1.57□□□□□ -2.66
UFD4P33202 VPS63YLR261C 327 nt-1.57□□□□□ -2.66
UFD4P33202 EST1YLR233C 2100 nt-1.59□□□□□ -2.66
UFD4P33202 tA(UGC)QtA(UGC)Q 76 nt-1.59□□□□□ -2.66
UFD4P33202 YDR269CYDR269C 324 nt-1.59□□□□□ -2.66
UFD4P33202 YOL160WYOL160W 342 nt-1.59□□□□□ -2.66
UFD4P33202 YIR044CYIR044C 186 nt-1.6□□□□□ -2.67
UFD4P33202 YJR140W-AYJR140W-A 150 nt-1.6□□□□□ -2.67
UFD4P33202 YLR282CYLR282C 342 nt-1.61□□□□□ -2.67
UFD4P33202 YBL008W-AYBL008W-A 240 nt-1.62□□□□□ -2.67
UFD4P33202 DFG10YIL049W 762 nt-1.63□□□□□ -2.67
UFD4P33202 GPX1YKL026C 504 nt-1.63□□□□□ -2.67
UFD4P33202 YHR138CYHR138C 345 nt-1.64□□□□□ -2.67
UFD4P33202 YLR171WYLR171W 390 nt-1.64□□□□□ -2.67
UFD4P33202 YML108WYML108W 318 nt-1.64□□□□□ -2.67
UFD4P33202 YBR099CYBR099C 384 nt-1.65□□□□□ -2.67
UFD4P33202 YHR054CYHR054C 1065 nt-1.68□□□□□ -2.68
UFD4P33202 YKL111CYKL111C 336 nt-1.68□□□□□ -2.68
UFD4P33202 YLR041WYLR041W 321 nt-1.68□□□□□ -2.68
UFD4P33202 RUF20RUF20 443 nt-1.68□□□□□ -2.68
UFD4P33202 YPL261CYPL261C 309 nt-1.68□□□□□ -2.68
UFD4P33202 ATG31YDR022C 591 nt-1.69□□□□□ -2.68
UFD4P33202 YMR307C-AYMR307C-A 195 nt-1.69□□□□□ -2.68
UFD4P33202 RPS10BYMR230W 318 nt-1.7□□□□□ -2.68
UFD4P33202 DCP1YOL149W 696 nt-1.73□□□□□ -2.69
UFD4P33202 YOL029CYOL029C 606 nt-1.75□□□□□ -2.69
UFD4P33202 YGL258W-AYGL258W-A 234 nt-1.75□□□□□ -2.69
UFD4P33202 PCF11YDR228C 1881 nt-1.76□□□□□ -2.69
UFD4P33202 YER079WYER079W 633 nt-1.76□□□□□ -2.69
UFD4P33202 YDL185C-AYDL185C-A 228 nt-1.77□□□□□ -2.69
UFD4P33202 YNL171CYNL171C 369 nt-1.77□□□□□ -2.69
UFD4P33202 YOL106WYOL106W 354 nt-1.77□□□□□ -2.69
UFD4P33202 snR59snR59 78 nt-1.8□□□□□ -2.7
UFD4P33202 AI5_BETAQ0075 1065 nt-1.8□□□□□ -2.7
UFD4P33202 LIN1YHR156C 1023 nt-1.81□□□□□ -2.7
UFD4P33202 YCR018C-AYCR018C-A 255 nt-1.82□□□□□ -2.7
UFD4P33202 YFL063WYFL063W 456 nt-1.82□□□□□ -2.7
UFD4P33202 CWC23YGL128C 852 nt-1.82□□□□□ -2.7
UFD4P33202 YOR364WYOR364W 369 nt-1.84□□□□□ -2.7
UFD4P33202 SDH7YDR511W 402 nt-1.85□□□□□ -2.71
UFD4P33202 CMC1YKL137W 336 nt-1.85□□□□□ -2.71
UFD4P33202 LRP1YHR081W 555 nt-1.86□□□□□ -2.71
UFD4P33202 POL32YJR043C 1053 nt-1.86□□□□□ -2.71
UFD4P33202 POP6YGR030C 477 nt-1.87□□□□□ -2.71
UFD4P33202 TAR1YLR154W-C 375 nt-1.87□□□□□ -2.71
UFD4P33202 IRC16YPR038W 360 nt-1.88□□□□□ -2.71
UFD4P33202 RPF1YHR088W 888 nt-1.88□□□□□ -2.71
UFD4P33202 BLI1YKL061W 342 nt-1.88□□□□□ -2.71
UFD4P33202 RPS20YHL015W 366 nt-1.89□□□□□ -2.71
UFD4P33202 BER1YLR412W 825 nt-1.89□□□□□ -2.71
UFD4P33202 snR72snR72 98 nt-1.9□□□□□ -2.71
UFD4P33202 YGR228WYGR228W 345 nt-1.9□□□□□ -2.71
UFD4P33202 YMR254CYMR254C 309 nt-1.9□□□□□ -2.71
UFD4P33202 YER188C-AYER188C-A 300 nt-1.91□□□□□ -2.72
UFD4P33202 tP(UGG)QtP(UGG)Q 72 nt-1.91□□□□□ -2.72
UFD4P33202 PAU9YBL108C-A 129 nt-1.91□□□□□ -2.72
UFD4P33202 SNU13YEL026W 381 nt-1.92□□□□□ -2.72
UFD4P33202 YJL182CYJL182C 318 nt-1.92□□□□□ -2.72
UFD4P33202 SKI7YOR076C 2244 nt-1.92□□□□□ -2.72
UFD4P33202 snR5snR5 204 nt-1.93□□□□□ -2.72
Retrieved 100 of 7,029 protein–RNA pairs in 15.7 ms