Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TERF1P1-201ENST00000311003 1181 ntBASIC19.41■□□□□ 0.7
COL5A1P20908 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A1P20908 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A1P20908 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A1P20908 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A1P20908 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A1P20908 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
COL5A1P20908 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL5A1P20908 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL5A1P20908 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL5A1P20908 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
COL5A1P20908 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL5A1P20908 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19.4■□□□□ 0.7
COL5A1P20908 SLC25A3P1-201ENST00000443844 931 ntBASIC19.4■□□□□ 0.7
COL5A1P20908 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL5A1P20908 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.4■□□□□ 0.7
COL5A1P20908 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.4■□□□□ 0.7
COL5A1P20908 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.4■□□□□ 0.7
COL5A1P20908 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
COL5A1P20908 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.4■□□□□ 0.7
COL5A1P20908 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.4■□□□□ 0.7
COL5A1P20908 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL5A1P20908 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.4■□□□□ 0.7
COL5A1P20908 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
COL5A1P20908 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL5A1P20908 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
COL5A1P20908 AC027702.1-201ENST00000563810 1770 ntBASIC19.4■□□□□ 0.7
COL5A1P20908 LINC01568-207ENST00000641790 1380 ntBASIC19.4■□□□□ 0.7
COL5A1P20908 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL5A1P20908 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
COL5A1P20908 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.39■□□□□ 0.7
COL5A1P20908 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.39■□□□□ 0.7
COL5A1P20908 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
COL5A1P20908 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.39■□□□□ 0.7
COL5A1P20908 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.39■□□□□ 0.69
COL5A1P20908 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.39■□□□□ 0.69
COL5A1P20908 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.39■□□□□ 0.69
COL5A1P20908 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL5A1P20908 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL5A1P20908 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL5A1P20908 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL5A1P20908 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL5A1P20908 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
COL5A1P20908 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.39■□□□□ 0.69
COL5A1P20908 KRT18P57-201ENST00000443599 1254 ntBASIC19.39■□□□□ 0.69
COL5A1P20908 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL5A1P20908 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.39■□□□□ 0.69
COL5A1P20908 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL5A1P20908 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
COL5A1P20908 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.39■□□□□ 0.69
COL5A1P20908 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL5A1P20908 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL5A1P20908 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
COL5A1P20908 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL5A1P20908 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL5A1P20908 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL5A1P20908 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL5A1P20908 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.38■□□□□ 0.69
COL5A1P20908 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.38■□□□□ 0.69
COL5A1P20908 FITM1-202ENST00000559294 800 ntBASIC19.38■□□□□ 0.69
COL5A1P20908 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL5A1P20908 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.38■□□□□ 0.69
COL5A1P20908 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL5A1P20908 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
COL5A1P20908 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL5A1P20908 AC073508.3-201ENST00000619697 1419 ntBASIC19.38■□□□□ 0.69
COL5A1P20908 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.38■□□□□ 0.69
COL5A1P20908 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A1P20908 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A1P20908 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.37■□□□□ 0.69
COL5A1P20908 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A1P20908 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A1P20908 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A1P20908 C1QL1P1-201ENST00000568105 661 ntBASIC19.37■□□□□ 0.69
COL5A1P20908 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.37■□□□□ 0.69
COL5A1P20908 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
COL5A1P20908 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A1P20908 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.37■□□□□ 0.69
COL5A1P20908 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.37■□□□□ 0.69
COL5A1P20908 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.37■□□□□ 0.69
COL5A1P20908 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A1P20908 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
COL5A1P20908 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A1P20908 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A1P20908 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.37■□□□□ 0.69
COL5A1P20908 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A1P20908 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
COL5A1P20908 MIR1238-201ENST00000408483 83 ntBASIC19.37■□□□□ 0.69
COL5A1P20908 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.37■□□□□ 0.69
COL5A1P20908 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.37■□□□□ 0.69
COL5A1P20908 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.37■□□□□ 0.69
COL5A1P20908 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.37■□□□□ 0.69
COL5A1P20908 C2orf69P3-201ENST00000565542 1120 ntBASIC19.37■□□□□ 0.69
COL5A1P20908 AC026271.3-201ENST00000571884 352 ntBASIC19.37■□□□□ 0.69
COL5A1P20908 AC010947.1-201ENST00000623454 693 ntBASIC19.37■□□□□ 0.69
COL5A1P20908 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.37■□□□□ 0.69
COL5A1P20908 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A1P20908 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL5A1P20908 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.36■□□□□ 0.69
COL5A1P20908 CYP2D8P-201ENST00000433633 1490 ntBASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms