Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AL158047.1-201ENST00000445918 881 ntBASIC20.52■□□□□ 0.88
CBX4O00257 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CBX4O00257 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.52■□□□□ 0.88
CBX4O00257 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.52■□□□□ 0.88
CBX4O00257 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.52■□□□□ 0.88
CBX4O00257 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CBX4O00257 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CBX4O00257 PTBP1P-201ENST00000554374 1601 ntBASIC20.52■□□□□ 0.88
CBX4O00257 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.52■□□□□ 0.87
CBX4O00257 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
CBX4O00257 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CBX4O00257 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CBX4O00257 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.51■□□□□ 0.87
CBX4O00257 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CBX4O00257 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CBX4O00257 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CBX4O00257 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.51■□□□□ 0.87
CBX4O00257 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.51■□□□□ 0.87
CBX4O00257 GCSHP5-201ENST00000443090 522 ntBASIC20.51■□□□□ 0.87
CBX4O00257 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CBX4O00257 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CBX4O00257 AC023632.3-201ENST00000521633 145 ntBASIC20.51■□□□□ 0.87
CBX4O00257 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.51■□□□□ 0.87
CBX4O00257 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.51■□□□□ 0.87
CBX4O00257 AC008403.3-201ENST00000598924 454 ntBASIC20.51■□□□□ 0.87
CBX4O00257 AC006058.3-201ENST00000606217 1069 ntBASIC20.51■□□□□ 0.87
CBX4O00257 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
CBX4O00257 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CBX4O00257 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.51■□□□□ 0.87
CBX4O00257 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CBX4O00257 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CBX4O00257 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CBX4O00257 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CBX4O00257 SMG8-203ENST00000578922 2178 ntBASIC20.51■□□□□ 0.87
CBX4O00257 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
CBX4O00257 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.5■□□□□ 0.87
CBX4O00257 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.5■□□□□ 0.87
CBX4O00257 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CBX4O00257 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CBX4O00257 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.5■□□□□ 0.87
CBX4O00257 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CBX4O00257 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CBX4O00257 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.5■□□□□ 0.87
CBX4O00257 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CBX4O00257 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.5■□□□□ 0.87
CBX4O00257 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.5■□□□□ 0.87
CBX4O00257 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CBX4O00257 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CBX4O00257 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CBX4O00257 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CBX4O00257 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CBX4O00257 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CBX4O00257 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CBX4O00257 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.5■□□□□ 0.87
CBX4O00257 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CBX4O00257 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.49■□□□□ 0.87
CBX4O00257 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.49■□□□□ 0.87
CBX4O00257 AC020907.5-201ENST00000624372 1936 ntBASIC20.49■□□□□ 0.87
CBX4O00257 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CBX4O00257 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CBX4O00257 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
CBX4O00257 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.49■□□□□ 0.87
CBX4O00257 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CBX4O00257 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CBX4O00257 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.49■□□□□ 0.87
CBX4O00257 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CBX4O00257 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.49■□□□□ 0.87
CBX4O00257 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.49■□□□□ 0.87
CBX4O00257 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CBX4O00257 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.49■□□□□ 0.87
CBX4O00257 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CBX4O00257 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CBX4O00257 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CBX4O00257 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CBX4O00257 FEM1AP1-201ENST00000431297 1995 ntBASIC20.48■□□□□ 0.87
CBX4O00257 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CBX4O00257 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.48■□□□□ 0.87
CBX4O00257 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.48■□□□□ 0.87
CBX4O00257 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.48■□□□□ 0.87
CBX4O00257 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CBX4O00257 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.48■□□□□ 0.87
CBX4O00257 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CBX4O00257 HLA-G-202ENST00000376815 851 ntBASIC20.48■□□□□ 0.87
CBX4O00257 HLA-G-203ENST00000376818 1127 ntBASIC20.48■□□□□ 0.87
CBX4O00257 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.48■□□□□ 0.87
CBX4O00257 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC20.48■□□□□ 0.87
CBX4O00257 AC128676.1-201ENST00000454392 318 ntBASIC20.48■□□□□ 0.87
CBX4O00257 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.48■□□□□ 0.87
CBX4O00257 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CBX4O00257 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.48■□□□□ 0.87
CBX4O00257 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
CBX4O00257 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.48■□□□□ 0.87
CBX4O00257 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
CBX4O00257 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.48■□□□□ 0.87
CBX4O00257 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CBX4O00257 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CBX4O00257 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CBX4O00257 KRT8P20-201ENST00000423953 1409 ntBASIC20.47■□□□□ 0.87
CBX4O00257 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CBX4O00257 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms