Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAV1-2A0A0B4J238 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRAV1-2A0A0B4J238 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
TRAV1-2A0A0B4J238 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC17.46■□□□□ 0.39
TRAV1-2A0A0B4J238 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
TRAV1-2A0A0B4J238 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.46■□□□□ 0.38
TRAV1-2A0A0B4J238 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.45■□□□□ 0.38
TRAV1-2A0A0B4J238 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
TRAV1-2A0A0B4J238 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.45■□□□□ 0.38
TRAV1-2A0A0B4J238 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV1-2A0A0B4J238 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV1-2A0A0B4J238 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV1-2A0A0B4J238 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV1-2A0A0B4J238 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV1-2A0A0B4J238 AC027682.1-201ENST00000562846 899 ntBASIC17.45■□□□□ 0.38
TRAV1-2A0A0B4J238 AL136162.1-201ENST00000607711 1078 ntBASIC17.45■□□□□ 0.38
TRAV1-2A0A0B4J238 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC17.45■□□□□ 0.38
TRAV1-2A0A0B4J238 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
TRAV1-2A0A0B4J238 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV1-2A0A0B4J238 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV1-2A0A0B4J238 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV1-2A0A0B4J238 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
TRAV1-2A0A0B4J238 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.45■□□□□ 0.38
TRAV1-2A0A0B4J238 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV1-2A0A0B4J238 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRAV1-2A0A0B4J238 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 AC135279.3-201ENST00000610945 1311 ntBASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC17.44■□□□□ 0.38
TRAV1-2A0A0B4J238 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 NAA20-201ENST00000310450 920 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 SERP1-208ENST00000491660 830 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 FAM21FP-204ENST00000608637 956 ntBASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 LINC01465-201ENST00000408887 1940 ntBASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRAV1-2A0A0B4J238 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 AL358852.1-201ENST00000623174 1268 ntBASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 AL138781.2-201ENST00000617896 1843 ntBASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
TRAV1-2A0A0B4J238 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms