Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 LINC01427-203ENST00000635277 781 ntTSL 5 BASIC8.9□□□□□ -0.98
HLA-DOAP06340 SORBS1-209ENST00000371245 2779 ntAPPRIS ALT2 TSL 1 (best) BASIC8.9□□□□□ -0.98
HLA-DOAP06340 ZNF385B-202ENST00000409343 2750 ntTSL 2 BASIC8.9□□□□□ -0.98
HLA-DOAP06340 PLS3-202ENST00000355899 3280 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
HLA-DOAP06340 AC107983.2-201ENST00000425211 4735 ntTSL 2 BASIC8.9□□□□□ -0.98
HLA-DOAP06340 ZMYND8-212ENST00000458360 3729 ntAPPRIS ALT2 TSL 1 (best) BASIC8.9□□□□□ -0.98
HLA-DOAP06340 AURKA-206ENST00000395913 2169 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
HLA-DOAP06340 AKT3-202ENST00000336199 1688 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
HLA-DOAP06340 DIS3-201ENST00000377767 10604 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
HLA-DOAP06340 PTBP3-204ENST00000374255 3413 ntAPPRIS P3 TSL 5 BASIC8.9□□□□□ -0.99
HLA-DOAP06340 THADA-204ENST00000403856 6939 ntTSL 1 (best) BASIC8.9□□□□□ -0.99
HLA-DOAP06340 CDH18-201ENST00000274170 2809 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
HLA-DOAP06340 MAS1-201ENST00000252660 9841 ntAPPRIS P1 BASIC8.89□□□□□ -0.99
HLA-DOAP06340 SOX6-211ENST00000528429 2656 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.99
HLA-DOAP06340 ADAM7-203ENST00000441335 1417 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
HLA-DOAP06340 ZSCAN30-211ENST00000610712 3439 ntTSL 4 BASIC8.89□□□□□ -0.99
HLA-DOAP06340 LINC00641-202ENST00000555688 1763 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
HLA-DOAP06340 PCDH15-226ENST00000613657 6329 ntAPPRIS ALT2 TSL 5 BASIC8.89□□□□□ -0.99
HLA-DOAP06340 AL008638.3-201ENST00000623027 5182 ntBASIC8.89□□□□□ -0.99
HLA-DOAP06340 KYNUP2-201ENST00000582280 1329 ntBASIC8.89□□□□□ -0.99
HLA-DOAP06340 HERC4-202ENST00000373700 3905 ntAPPRIS P3 TSL 1 (best) BASIC8.89□□□□□ -0.99
HLA-DOAP06340 ATM-215ENST00000530958 5718 ntTSL 2 BASIC8.89□□□□□ -0.99
HLA-DOAP06340 NPM1P14-201ENST00000343743 866 ntBASIC8.89□□□□□ -0.99
HLA-DOAP06340 AL590143.1-201ENST00000405071 138 ntBASIC8.89□□□□□ -0.99
HLA-DOAP06340 AL355862.1-201ENST00000412705 353 ntBASIC8.89□□□□□ -0.99
HLA-DOAP06340 AL031005.1-201ENST00000416959 723 ntTSL 3 BASIC8.89□□□□□ -0.99
HLA-DOAP06340 WWC3-AS1-201ENST00000430057 578 ntTSL 3 BASIC8.89□□□□□ -0.99
HLA-DOAP06340 LIN28AP2-201ENST00000445283 458 ntBASIC8.89□□□□□ -0.99
HLA-DOAP06340 AL356157.1-201ENST00000456722 732 ntTSL 3 BASIC8.89□□□□□ -0.99
HLA-DOAP06340 RPL12P40-201ENST00000467028 488 ntBASIC8.89□□□□□ -0.99
HLA-DOAP06340 LNX1-AS2-202ENST00000509974 628 ntTSL 2 BASIC8.89□□□□□ -0.99
HLA-DOAP06340 AC027315.1-201ENST00000511592 469 ntTSL 3 BASIC8.89□□□□□ -0.99
HLA-DOAP06340 SLC25A51P2-201ENST00000535708 889 ntBASIC8.89□□□□□ -0.99
HLA-DOAP06340 AL161747.2-201ENST00000535893 472 ntTSL 5 BASIC8.89□□□□□ -0.99
HLA-DOAP06340 AL358334.3-201ENST00000557343 535 ntTSL 3 BASIC8.89□□□□□ -0.99
HLA-DOAP06340 AL512430.4-201ENST00000603085 613 ntBASIC8.89□□□□□ -0.99
HLA-DOAP06340 AC079791.1-201ENST00000605356 973 ntBASIC8.89□□□□□ -0.99
HLA-DOAP06340 AC107308.1-201ENST00000615897 301 ntBASIC8.89□□□□□ -0.99
HLA-DOAP06340 NPPA-AS1_1.1-201ENST00000622391 173 ntBASIC8.89□□□□□ -0.99
HLA-DOAP06340 AC063952.4-201ENST00000634744 825 ntTSL 5 BASIC8.89□□□□□ -0.99
HLA-DOAP06340 DDX3Y-202ENST00000360160 2709 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.99
HLA-DOAP06340 LRRC37A-201ENST00000320254 5177 ntAPPRIS P2 TSL 1 (best) BASIC8.89□□□□□ -0.99
HLA-DOAP06340 PDE4DIP-205ENST00000369354 8262 ntAPPRIS ALT2 TSL 1 (best) BASIC8.89□□□□□ -0.99
HLA-DOAP06340 CYP39A1-205ENST00000619708 2269 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
HLA-DOAP06340 ZNRD1ASP-211ENST00000376797 3270 ntTSL 2 BASIC8.89□□□□□ -0.99
HLA-DOAP06340 LINC00559-201ENST00000569476 3867 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
HLA-DOAP06340 OR4F15-201ENST00000332238 2119 ntAPPRIS P1 BASIC8.89□□□□□ -0.99
HLA-DOAP06340 SNCAIP-201ENST00000261367 4986 ntTSL 1 (best) BASIC8.89□□□□□ -0.99
HLA-DOAP06340 CACNB4-250ENST00000637418 2015 ntTSL 5 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 COLGALT2-202ENST00000367520 2325 ntTSL 2 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 ZNF90-201ENST00000418063 2310 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
HLA-DOAP06340 AC116351.1-201ENST00000399869 3482 ntTSL 2 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 CACNA1D-211ENST00000636570 6441 ntAPPRIS ALT2 TSL 5 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 RRM2-213ENST00000641198 3431 ntAPPRIS P1 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 ETS1-202ENST00000392668 5139 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
HLA-DOAP06340 AC104051.2-201ENST00000518934 2461 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
HLA-DOAP06340 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 GDNF-208ENST00000620847 3638 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
HLA-DOAP06340 SAMMSON-203ENST00000641005 2168 ntBASIC8.88□□□□□ -0.99
HLA-DOAP06340 ZNF45-204ENST00000589703 2409 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
HLA-DOAP06340 RN7SKP36-201ENST00000363997 312 ntBASIC8.88□□□□□ -0.99
HLA-DOAP06340 RNU1-122P-201ENST00000365538 156 ntBASIC8.88□□□□□ -0.99
HLA-DOAP06340 MIR27A-201ENST00000385073 78 ntBASIC8.88□□□□□ -0.99
HLA-DOAP06340 MIR498-201ENST00000385134 124 ntBASIC8.88□□□□□ -0.99
HLA-DOAP06340 LINC01715-201ENST00000420776 624 ntTSL 2 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 MTND1P10-201ENST00000426108 832 ntBASIC8.88□□□□□ -0.99
HLA-DOAP06340 PTCSC2-201ENST00000430058 204 ntTSL 2 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 AL354983.1-201ENST00000434580 906 ntBASIC8.88□□□□□ -0.99
HLA-DOAP06340 LINC02243-201ENST00000441841 961 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
HLA-DOAP06340 LINC01706-201ENST00000455299 748 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
HLA-DOAP06340 AL390026.1-201ENST00000456647 457 ntBASIC8.88□□□□□ -0.99
HLA-DOAP06340 AC015820.1-201ENST00000473882 321 ntBASIC8.88□□□□□ -0.99
HLA-DOAP06340 RPS10P28-201ENST00000480396 498 ntBASIC8.88□□□□□ -0.99
HLA-DOAP06340 ANK3-213ENST00000486349 493 ntTSL 2 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 AC023078.5-201ENST00000528646 707 ntTSL 3 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 OR4C1P-201ENST00000530880 937 ntBASIC8.88□□□□□ -0.99
HLA-DOAP06340 AL117192.1-204ENST00000553485 449 ntTSL 2 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 AC020892.1-201ENST00000559918 855 ntTSL 2 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 DYNLRB2-204ENST00000562982 492 ntTSL 3 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 AC010980.1-204ENST00000589724 585 ntTSL 5 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 RN7SL536P-201ENST00000612366 290 ntBASIC8.88□□□□□ -0.99
HLA-DOAP06340 LINC00923-204ENST00000614972 1181 ntTSL 5 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 RN7SL545P-201ENST00000620547 290 ntBASIC8.88□□□□□ -0.99
HLA-DOAP06340 RN7SL759P-201ENST00000620768 290 ntBASIC8.88□□□□□ -0.99
HLA-DOAP06340 AC017002.5-201ENST00000630717 871 ntTSL 5 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 SNORA43.5-201ENST00000631270 138 ntBASIC8.88□□□□□ -0.99
HLA-DOAP06340 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
HLA-DOAP06340 LMLN-202ENST00000332636 1812 ntTSL 1 (best) BASIC8.88□□□□□ -0.99
HLA-DOAP06340 AC023055.1-201ENST00000546837 1807 ntAPPRIS P1 TSL 2 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 SLC7A2-203ENST00000470360 7638 ntAPPRIS P3 TSL 5 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 FHL1-217ENST00000539015 2310 ntTSL 2 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 FNDC3B-203ENST00000416957 3684 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
HLA-DOAP06340 SLC22A10-201ENST00000332793 2026 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
HLA-DOAP06340 APP-209ENST00000440126 2846 ntTSL 2 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 WBP1L-201ENST00000369889 4107 ntAPPRIS P3 TSL 1 (best) BASIC8.88□□□□□ -0.99
HLA-DOAP06340 IL12B-201ENST00000231228 2761 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
HLA-DOAP06340 CAST-236ENST00000511782 2466 ntAPPRIS ALT2 TSL 2 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 HRH1-203ENST00000431010 4278 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
HLA-DOAP06340 RERE-203ENST00000400907 2973 ntTSL 5 BASIC8.88□□□□□ -0.99
HLA-DOAP06340 MED31-201ENST00000225728 1654 ntAPPRIS P1 TSL 1 (best) BASIC8.88□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms