Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 FNDC3B-203ENST00000416957 3684 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 AL512634.1-201ENST00000566873 2432 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 CALML4-208ENST00000540479 4603 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 STXBP5-204ENST00000367481 9177 ntAPPRIS P3 TSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 AL158152.1-201ENST00000602652 1435 ntBASIC8.32□□□□□ -1.08
MSX1P28360 DCLRE1C-205ENST00000378249 2246 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 CYB561A3-221ENST00000546151 3986 ntTSL 3 BASIC8.32□□□□□ -1.08
MSX1P28360 FLI1-202ENST00000344954 3427 ntTSL 2 BASIC8.32□□□□□ -1.08
MSX1P28360 SZRD1-210ENST00000492354 3401 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 SSR2-201ENST00000295702 1116 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 KRTAP11-1-201ENST00000332378 912 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
MSX1P28360 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC8.32□□□□□ -1.08
MSX1P28360 NEK10-203ENST00000383770 1257 ntTSL 5 BASIC8.32□□□□□ -1.08
MSX1P28360 AL590286.1-201ENST00000404178 291 ntBASIC8.32□□□□□ -1.08
MSX1P28360 NIP7P3-201ENST00000404319 515 ntBASIC8.32□□□□□ -1.08
MSX1P28360 RNA5SP203-201ENST00000410451 136 ntBASIC8.32□□□□□ -1.08
MSX1P28360 AGBL5-IT1-201ENST00000411862 339 ntTSL 3 BASIC8.32□□□□□ -1.08
MSX1P28360 AC092810.3-201ENST00000416349 473 ntTSL 3 BASIC8.32□□□□□ -1.08
MSX1P28360 RTCA-AS1-201ENST00000421185 423 ntTSL 3 BASIC8.32□□□□□ -1.08
MSX1P28360 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC8.32□□□□□ -1.08
MSX1P28360 MTCO2P34-201ENST00000421994 607 ntBASIC8.32□□□□□ -1.08
MSX1P28360 AC116609.1-201ENST00000425850 535 ntTSL 4 BASIC8.32□□□□□ -1.08
MSX1P28360 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC8.32□□□□□ -1.08
MSX1P28360 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC8.32□□□□□ -1.08
MSX1P28360 AC091862.1-201ENST00000438016 1100 ntBASIC8.32□□□□□ -1.08
MSX1P28360 AP002383.1-201ENST00000439405 720 ntBASIC8.32□□□□□ -1.08
MSX1P28360 OR2W6P-201ENST00000439689 939 ntBASIC8.32□□□□□ -1.08
MSX1P28360 HMGB3P6-201ENST00000444896 598 ntBASIC8.32□□□□□ -1.08
MSX1P28360 EFCAB2-207ENST00000447569 527 ntTSL 2 BASIC8.32□□□□□ -1.08
MSX1P28360 AL022318.1-201ENST00000450216 678 ntTSL 3 BASIC8.32□□□□□ -1.08
MSX1P28360 AC098613.1-201ENST00000451485 656 ntTSL 3 BASIC8.32□□□□□ -1.08
MSX1P28360 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC8.32□□□□□ -1.08
MSX1P28360 RN7SKP241-201ENST00000464584 291 ntBASIC8.32□□□□□ -1.08
MSX1P28360 AC074386.1-206ENST00000487102 761 ntBASIC8.32□□□□□ -1.08
MSX1P28360 RPL10AP1-201ENST00000490023 643 ntBASIC8.32□□□□□ -1.08
MSX1P28360 AC092045.1-201ENST00000495716 1231 ntBASIC8.32□□□□□ -1.08
MSX1P28360 RN7SL700P-201ENST00000496982 294 ntBASIC8.32□□□□□ -1.08
MSX1P28360 AC113430.1-201ENST00000506872 718 ntBASIC8.32□□□□□ -1.08
MSX1P28360 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC8.32□□□□□ -1.08
MSX1P28360 AC010457.1-202ENST00000510137 337 ntTSL 2 BASIC8.32□□□□□ -1.08
MSX1P28360 AC022092.1-201ENST00000510230 504 ntTSL 3 BASIC8.32□□□□□ -1.08
MSX1P28360 SRD5A3-AS1-202ENST00000510637 926 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 CR383658.1-201ENST00000514609 734 ntBASIC8.32□□□□□ -1.08
MSX1P28360 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC8.32□□□□□ -1.08
MSX1P28360 SAP30L-AS1-204ENST00000524264 1039 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 AP002360.1-204ENST00000529331 700 ntAPPRIS ALT2 TSL 2 BASIC8.32□□□□□ -1.08
MSX1P28360 LINC01559-203ENST00000531049 683 ntTSL 3 BASIC8.32□□□□□ -1.08
MSX1P28360 CACNA1C-AS2-201ENST00000545526 609 ntTSL 2 BASIC8.32□□□□□ -1.08
MSX1P28360 LINC02359-201ENST00000545642 643 ntTSL 3 BASIC8.32□□□□□ -1.08
MSX1P28360 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC8.32□□□□□ -1.08
MSX1P28360 AC021483.2-201ENST00000567415 758 ntBASIC8.32□□□□□ -1.08
MSX1P28360 KIR3DP1-201ENST00000580853 628 ntBASIC8.32□□□□□ -1.08
MSX1P28360 AC103949.1-201ENST00000582064 457 ntTSL 3 BASIC8.32□□□□□ -1.08
MSX1P28360 AC060766.6-201ENST00000589099 394 ntTSL 3 BASIC8.32□□□□□ -1.08
MSX1P28360 AC078795.3-201ENST00000602913 472 ntBASIC8.32□□□□□ -1.08
MSX1P28360 AL445423.1-201ENST00000609941 536 ntBASIC8.32□□□□□ -1.08
MSX1P28360 AC244255.1-201ENST00000613463 398 ntBASIC8.32□□□□□ -1.08
MSX1P28360 Z98043.1-201ENST00000624123 339 ntBASIC8.32□□□□□ -1.08
MSX1P28360 C1orf137-201ENST00000624685 386 ntTSL 3 BASIC8.32□□□□□ -1.08
MSX1P28360 AC245100.4-207ENST00000640776 1082 ntBASIC8.32□□□□□ -1.08
MSX1P28360 HAO2-202ENST00000361035 1668 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 LINC01411-203ENST00000507361 2098 ntTSL 3 BASIC8.32□□□□□ -1.08
MSX1P28360 USP30-203ENST00000392784 2483 ntTSL 2 BASIC8.32□□□□□ -1.08
MSX1P28360 AC138869.3-201ENST00000563960 2486 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 ACSBG2-206ENST00000588485 2478 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 CR786580.1-201ENST00000417843 2878 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 LINC01410-201ENST00000424345 2877 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 ATP5E-201ENST00000243997 3665 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 SLC9A6-209ENST00000636347 4867 ntTSL 5 BASIC8.32□□□□□ -1.08
MSX1P28360 BHLHB9-202ENST00000372735 5130 ntAPPRIS P1 TSL 5 BASIC8.32□□□□□ -1.08
MSX1P28360 MCTP1-201ENST00000312216 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 DTNA-226ENST00000596745 1508 ntTSL 2 BASIC8.32□□□□□ -1.08
MSX1P28360 ALOXE3-202ENST00000380149 3362 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 AC092279.2-201ENST00000623742 2189 ntBASIC8.32□□□□□ -1.08
MSX1P28360 CLCN3-202ENST00000360642 3208 ntTSL 2 BASIC8.32□□□□□ -1.08
MSX1P28360 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 LETMD1-228ENST00000550929 1389 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 NOS2-202ENST00000621962 3345 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 RPS3-214ENST00000530164 1878 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 MFN1-205ENST00000471841 5224 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 CUX1-206ENST00000437600 3031 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 RPAP1-202ENST00000561603 3906 ntTSL 5 BASIC8.32□□□□□ -1.08
MSX1P28360 RBFOX1-223ENST00000620507 4018 ntTSL 5 BASIC8.32□□□□□ -1.08
MSX1P28360 IKZF3-217ENST00000623724 9787 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
MSX1P28360 ABLIM1-206ENST00000392952 6841 ntTSL 5 BASIC8.32□□□□□ -1.08
MSX1P28360 GC-201ENST00000273951 1972 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 CLDN2-201ENST00000336803 2959 ntAPPRIS P1 TSL 2 BASIC8.31□□□□□ -1.08
MSX1P28360 KRTAP9-6-201ENST00000391355 1303 ntAPPRIS P1 BASIC8.31□□□□□ -1.08
MSX1P28360 AP001347.1-201ENST00000428809 1332 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 SLMAP-219ENST00000494088 1305 ntTSL 2 BASIC8.31□□□□□ -1.08
MSX1P28360 SGO1P2-201ENST00000429458 1589 ntBASIC8.31□□□□□ -1.08
MSX1P28360 SRSF10-207ENST00000453840 1808 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 ZNF726-201ENST00000322487 2330 ntAPPRIS P1 TSL 5 BASIC8.31□□□□□ -1.08
MSX1P28360 AP3M1-202ENST00000372745 2320 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 LRRC8D-202ENST00000394593 3345 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 TGIF2-208ENST00000611732 3344 ntAPPRIS P1 TSL 2 BASIC8.31□□□□□ -1.08
MSX1P28360 NR3C2-208ENST00000512865 3822 ntTSL 1 (best) BASIC8.31□□□□□ -1.08
MSX1P28360 MTF2-213ENST00000540243 3845 ntTSL 2 BASIC8.31□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms