Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.93■□□□□ 0.78
TRIM39Q9HCM9 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 MIR4651-201ENST00000582622 73 ntBASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM39Q9HCM9 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 AC023632.3-201ENST00000521633 145 ntBASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 AC005829.2-201ENST00000571422 1056 ntBASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM39Q9HCM9 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 TSPY20P-201ENST00000450910 630 ntBASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 SLC29A4P2-201ENST00000504749 1089 ntBASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM39Q9HCM9 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.78
TRIM39Q9HCM9 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 AL390719.1-204ENST00000412397 1219 ntBASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.89■□□□□ 0.77
TRIM39Q9HCM9 OR2A1-AS1-207ENST00000486094 819 ntBASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms