Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
UPF3AQ9H1J1 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
UPF3AQ9H1J1 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC22.49■■□□□ 1.19
UPF3AQ9H1J1 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC22.49■■□□□ 1.19
UPF3AQ9H1J1 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
UPF3AQ9H1J1 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
UPF3AQ9H1J1 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
UPF3AQ9H1J1 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC22.49■■□□□ 1.19
UPF3AQ9H1J1 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
UPF3AQ9H1J1 CBFB-203ENST00000561924 584 ntTSL 5 BASIC22.49■■□□□ 1.19
UPF3AQ9H1J1 AC004264.1-201ENST00000608354 794 ntBASIC22.49■■□□□ 1.19
UPF3AQ9H1J1 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC22.49■■□□□ 1.19
UPF3AQ9H1J1 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC22.49■■□□□ 1.19
UPF3AQ9H1J1 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
UPF3AQ9H1J1 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
UPF3AQ9H1J1 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
UPF3AQ9H1J1 AC079598.2-202ENST00000546624 1451 ntBASIC22.48■■□□□ 1.19
UPF3AQ9H1J1 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
UPF3AQ9H1J1 AC233723.2-201ENST00000623798 2106 ntBASIC22.48■■□□□ 1.19
UPF3AQ9H1J1 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
UPF3AQ9H1J1 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC22.48■■□□□ 1.19
UPF3AQ9H1J1 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
UPF3AQ9H1J1 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
UPF3AQ9H1J1 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC22.48■■□□□ 1.19
UPF3AQ9H1J1 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC22.48■■□□□ 1.19
UPF3AQ9H1J1 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC22.48■■□□□ 1.19
UPF3AQ9H1J1 REXO1L10P-201ENST00000615707 1290 ntBASIC22.48■■□□□ 1.19
UPF3AQ9H1J1 AC079834.2-201ENST00000609776 1949 ntBASIC22.48■■□□□ 1.19
UPF3AQ9H1J1 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
UPF3AQ9H1J1 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC22.48■■□□□ 1.19
UPF3AQ9H1J1 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
UPF3AQ9H1J1 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC22.48■■□□□ 1.19
UPF3AQ9H1J1 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
UPF3AQ9H1J1 KRT8P9-201ENST00000558927 1449 ntBASIC22.48■■□□□ 1.19
UPF3AQ9H1J1 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
UPF3AQ9H1J1 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
UPF3AQ9H1J1 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
UPF3AQ9H1J1 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
UPF3AQ9H1J1 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
UPF3AQ9H1J1 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC22.47■■□□□ 1.19
UPF3AQ9H1J1 MIR6786-201ENST00000616843 113 ntBASIC22.47■■□□□ 1.19
UPF3AQ9H1J1 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
UPF3AQ9H1J1 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
UPF3AQ9H1J1 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC22.47■■□□□ 1.19
UPF3AQ9H1J1 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC22.47■■□□□ 1.19
UPF3AQ9H1J1 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
UPF3AQ9H1J1 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
UPF3AQ9H1J1 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
UPF3AQ9H1J1 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
UPF3AQ9H1J1 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
UPF3AQ9H1J1 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
UPF3AQ9H1J1 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
UPF3AQ9H1J1 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC22.46■■□□□ 1.19
UPF3AQ9H1J1 GLDC-219ENST00000640208 420 ntTSL 2 BASIC22.46■■□□□ 1.19
UPF3AQ9H1J1 AC092865.7-201ENST00000641832 219 ntBASIC22.46■■□□□ 1.19
UPF3AQ9H1J1 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
UPF3AQ9H1J1 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
UPF3AQ9H1J1 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC22.46■■□□□ 1.19
UPF3AQ9H1J1 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
UPF3AQ9H1J1 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
UPF3AQ9H1J1 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC22.46■■□□□ 1.19
UPF3AQ9H1J1 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC22.46■■□□□ 1.19
UPF3AQ9H1J1 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
UPF3AQ9H1J1 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
UPF3AQ9H1J1 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC22.45■■□□□ 1.18
UPF3AQ9H1J1 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
UPF3AQ9H1J1 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
UPF3AQ9H1J1 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC22.45■■□□□ 1.18
UPF3AQ9H1J1 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC22.45■■□□□ 1.18
UPF3AQ9H1J1 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC22.45■■□□□ 1.18
UPF3AQ9H1J1 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
UPF3AQ9H1J1 AP002982.1-201ENST00000492365 877 ntBASIC22.45■■□□□ 1.18
UPF3AQ9H1J1 P4HB-223ENST00000576390 439 ntTSL 4 BASIC22.45■■□□□ 1.18
UPF3AQ9H1J1 AP000525.1-201ENST00000608286 694 ntBASIC22.45■■□□□ 1.18
UPF3AQ9H1J1 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC22.45■■□□□ 1.18
UPF3AQ9H1J1 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC22.45■■□□□ 1.18
UPF3AQ9H1J1 PTBP1P-201ENST00000554374 1601 ntBASIC22.45■■□□□ 1.18
UPF3AQ9H1J1 AC244015.2-201ENST00000616358 1861 ntBASIC22.45■■□□□ 1.18
UPF3AQ9H1J1 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
UPF3AQ9H1J1 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC22.45■■□□□ 1.18
UPF3AQ9H1J1 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
UPF3AQ9H1J1 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
UPF3AQ9H1J1 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
UPF3AQ9H1J1 UNC93B2-201ENST00000285383 730 ntBASIC22.44■■□□□ 1.18
UPF3AQ9H1J1 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC22.44■■□□□ 1.18
UPF3AQ9H1J1 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
UPF3AQ9H1J1 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
UPF3AQ9H1J1 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
UPF3AQ9H1J1 KRT18P35-201ENST00000510488 1269 ntBASIC22.44■■□□□ 1.18
UPF3AQ9H1J1 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
UPF3AQ9H1J1 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
UPF3AQ9H1J1 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC22.44■■□□□ 1.18
UPF3AQ9H1J1 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
UPF3AQ9H1J1 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
UPF3AQ9H1J1 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
UPF3AQ9H1J1 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC22.44■■□□□ 1.18
UPF3AQ9H1J1 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC22.43■■□□□ 1.18
UPF3AQ9H1J1 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
UPF3AQ9H1J1 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
UPF3AQ9H1J1 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC22.43■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms