Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
SCAPERQ9BY12 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC30.47■■■□□ 2.47
SCAPERQ9BY12 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC30.47■■■□□ 2.47
SCAPERQ9BY12 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
SCAPERQ9BY12 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC30.47■■■□□ 2.47
SCAPERQ9BY12 ECEL1P2-202ENST00000465689 757 ntBASIC30.47■■■□□ 2.47
SCAPERQ9BY12 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
SCAPERQ9BY12 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC30.47■■■□□ 2.47
SCAPERQ9BY12 NMU-205ENST00000511469 756 ntTSL 3 BASIC30.47■■■□□ 2.47
SCAPERQ9BY12 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
SCAPERQ9BY12 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC30.47■■■□□ 2.47
SCAPERQ9BY12 AC027702.1-201ENST00000563810 1770 ntBASIC30.46■■■□□ 2.47
SCAPERQ9BY12 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC30.46■■■□□ 2.47
SCAPERQ9BY12 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC30.46■■■□□ 2.47
SCAPERQ9BY12 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC30.46■■■□□ 2.47
SCAPERQ9BY12 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
SCAPERQ9BY12 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC30.46■■■□□ 2.47
SCAPERQ9BY12 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC30.46■■■□□ 2.47
SCAPERQ9BY12 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
SCAPERQ9BY12 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC30.46■■■□□ 2.47
SCAPERQ9BY12 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC30.46■■■□□ 2.47
SCAPERQ9BY12 UPK3BP1-201ENST00000428678 509 ntBASIC30.46■■■□□ 2.47
SCAPERQ9BY12 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC30.46■■■□□ 2.47
SCAPERQ9BY12 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC30.46■■■□□ 2.47
SCAPERQ9BY12 C2orf69P3-201ENST00000565542 1120 ntBASIC30.46■■■□□ 2.47
SCAPERQ9BY12 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC30.46■■■□□ 2.47
SCAPERQ9BY12 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC30.46■■■□□ 2.47
SCAPERQ9BY12 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC30.45■■■□□ 2.47
SCAPERQ9BY12 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC30.45■■■□□ 2.47
SCAPERQ9BY12 PTBP1P-201ENST00000554374 1601 ntBASIC30.45■■■□□ 2.47
SCAPERQ9BY12 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC30.45■■■□□ 2.47
SCAPERQ9BY12 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
SCAPERQ9BY12 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC30.45■■■□□ 2.47
SCAPERQ9BY12 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
SCAPERQ9BY12 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC30.45■■■□□ 2.46
SCAPERQ9BY12 TSPY14P-201ENST00000303979 915 ntBASIC30.45■■■□□ 2.46
SCAPERQ9BY12 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
SCAPERQ9BY12 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC30.45■■■□□ 2.46
SCAPERQ9BY12 ISCU-203ENST00000431221 799 ntTSL 2 BASIC30.45■■■□□ 2.46
SCAPERQ9BY12 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC30.45■■■□□ 2.46
SCAPERQ9BY12 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC30.45■■■□□ 2.46
SCAPERQ9BY12 AC026271.3-201ENST00000571884 352 ntBASIC30.45■■■□□ 2.46
SCAPERQ9BY12 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC30.45■■■□□ 2.46
SCAPERQ9BY12 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC30.45■■■□□ 2.46
SCAPERQ9BY12 AL358472.4-201ENST00000633140 710 ntBASIC30.45■■■□□ 2.46
SCAPERQ9BY12 ABBA01031674.1-201ENST00000635145 728 ntBASIC30.45■■■□□ 2.46
SCAPERQ9BY12 MYC-208ENST00000641036 567 ntBASIC30.45■■■□□ 2.46
SCAPERQ9BY12 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
SCAPERQ9BY12 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
SCAPERQ9BY12 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
SCAPERQ9BY12 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC30.44■■■□□ 2.46
SCAPERQ9BY12 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC30.44■■■□□ 2.46
SCAPERQ9BY12 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC30.44■■■□□ 2.46
SCAPERQ9BY12 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
SCAPERQ9BY12 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC30.43■■■□□ 2.46
SCAPERQ9BY12 C9orf163-202ENST00000624034 2573 ntBASIC30.43■■■□□ 2.46
SCAPERQ9BY12 LIN28AP1-201ENST00000429574 405 ntBASIC30.43■■■□□ 2.46
SCAPERQ9BY12 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC30.43■■■□□ 2.46
SCAPERQ9BY12 EGLN1P1-201ENST00000531623 762 ntBASIC30.43■■■□□ 2.46
SCAPERQ9BY12 C1QL1P1-201ENST00000568105 661 ntBASIC30.43■■■□□ 2.46
SCAPERQ9BY12 AL031985.4-201ENST00000642138 673 ntBASIC30.43■■■□□ 2.46
SCAPERQ9BY12 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC30.43■■■□□ 2.46
SCAPERQ9BY12 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC30.43■■■□□ 2.46
SCAPERQ9BY12 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC30.43■■■□□ 2.46
SCAPERQ9BY12 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC30.43■■■□□ 2.46
SCAPERQ9BY12 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC30.43■■■□□ 2.46
SCAPERQ9BY12 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC30.42■■■□□ 2.46
SCAPERQ9BY12 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
SCAPERQ9BY12 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
SCAPERQ9BY12 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
SCAPERQ9BY12 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC30.42■■■□□ 2.46
SCAPERQ9BY12 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC30.42■■■□□ 2.46
SCAPERQ9BY12 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
SCAPERQ9BY12 AC063952.2-201ENST00000498792 1227 ntBASIC30.42■■■□□ 2.46
SCAPERQ9BY12 FAM87A-204ENST00000613235 858 ntBASIC30.42■■■□□ 2.46
SCAPERQ9BY12 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC30.42■■■□□ 2.46
SCAPERQ9BY12 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC30.42■■■□□ 2.46
SCAPERQ9BY12 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
SCAPERQ9BY12 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC30.42■■■□□ 2.46
SCAPERQ9BY12 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC30.42■■■□□ 2.46
SCAPERQ9BY12 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
SCAPERQ9BY12 PPP1R14BP5-201ENST00000440334 435 ntBASIC30.41■■■□□ 2.46
SCAPERQ9BY12 ATP5G1P1-201ENST00000448724 379 ntBASIC30.41■■■□□ 2.46
SCAPERQ9BY12 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC30.41■■■□□ 2.46
SCAPERQ9BY12 METTL23-204ENST00000586752 904 ntTSL 2 BASIC30.41■■■□□ 2.46
SCAPERQ9BY12 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
SCAPERQ9BY12 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
SCAPERQ9BY12 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
SCAPERQ9BY12 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
SCAPERQ9BY12 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
SCAPERQ9BY12 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
SCAPERQ9BY12 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC30.4■■■□□ 2.46
SCAPERQ9BY12 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
SCAPERQ9BY12 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC30.4■■■□□ 2.46
SCAPERQ9BY12 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC30.4■■■□□ 2.46
SCAPERQ9BY12 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC30.4■■■□□ 2.46
SCAPERQ9BY12 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC30.4■■■□□ 2.46
SCAPERQ9BY12 DGCR10-201ENST00000609839 495 ntBASIC30.4■■■□□ 2.46
SCAPERQ9BY12 FSCN1P1-201ENST00000568912 1481 ntBASIC30.4■■■□□ 2.46
SCAPERQ9BY12 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms