Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 EDA-201ENST00000338901 1233 ntBASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 AC010141.2-201ENST00000452426 721 ntBASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC28BQ9BUN5 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC28BQ9BUN5 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CCDC28BQ9BUN5 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC28BQ9BUN5 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC28BQ9BUN5 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC28BQ9BUN5 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.53■□□□□ 0.72
CCDC28BQ9BUN5 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC28BQ9BUN5 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC28BQ9BUN5 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC28BQ9BUN5 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC28BQ9BUN5 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC28BQ9BUN5 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC28BQ9BUN5 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC28BQ9BUN5 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC28BQ9BUN5 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC28BQ9BUN5 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC28BQ9BUN5 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
CCDC28BQ9BUN5 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.52■□□□□ 0.72
CCDC28BQ9BUN5 AC020916.1-201ENST00000587762 1774 ntBASIC19.52■□□□□ 0.72
CCDC28BQ9BUN5 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28BQ9BUN5 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28BQ9BUN5 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28BQ9BUN5 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.52■□□□□ 0.72
CCDC28BQ9BUN5 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28BQ9BUN5 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28BQ9BUN5 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28BQ9BUN5 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.52■□□□□ 0.72
CCDC28BQ9BUN5 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28BQ9BUN5 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28BQ9BUN5 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28BQ9BUN5 PBX2P1-201ENST00000493219 1291 ntBASIC19.52■□□□□ 0.72
CCDC28BQ9BUN5 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28BQ9BUN5 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC19.52■□□□□ 0.72
CCDC28BQ9BUN5 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28BQ9BUN5 AL355001.2-201ENST00000620617 1191 ntBASIC19.52■□□□□ 0.72
CCDC28BQ9BUN5 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC28BQ9BUN5 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
CCDC28BQ9BUN5 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CCDC28BQ9BUN5 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CCDC28BQ9BUN5 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
CCDC28BQ9BUN5 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.52■□□□□ 0.71
CCDC28BQ9BUN5 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 MIR939-201ENST00000401314 82 ntBASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 AC106739.1-201ENST00000617035 715 ntBASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 AL358852.1-201ENST00000623174 1268 ntBASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 AC093484.2-201ENST00000580996 2166 ntBASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CCDC28BQ9BUN5 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms