Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS13AQ96RL7 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.06■□□□□ 0.8
VPS13AQ96RL7 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS13AQ96RL7 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.06■□□□□ 0.8
VPS13AQ96RL7 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS13AQ96RL7 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS13AQ96RL7 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
VPS13AQ96RL7 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
VPS13AQ96RL7 AL121829.2-201ENST00000620908 328 ntBASIC20.06■□□□□ 0.8
VPS13AQ96RL7 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
VPS13AQ96RL7 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
VPS13AQ96RL7 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VPS13AQ96RL7 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
VPS13AQ96RL7 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
VPS13AQ96RL7 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS13AQ96RL7 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS13AQ96RL7 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS13AQ96RL7 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS13AQ96RL7 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS13AQ96RL7 AC246785.2-201ENST00000432512 513 ntBASIC20.06■□□□□ 0.8
VPS13AQ96RL7 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.06■□□□□ 0.8
VPS13AQ96RL7 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS13AQ96RL7 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.05■□□□□ 0.8
VPS13AQ96RL7 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
VPS13AQ96RL7 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VPS13AQ96RL7 AC091390.4-202ENST00000476426 537 ntBASIC20.05■□□□□ 0.8
VPS13AQ96RL7 FAM86EP-206ENST00000510506 987 ntBASIC20.05■□□□□ 0.8
VPS13AQ96RL7 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VPS13AQ96RL7 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS13AQ96RL7 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS13AQ96RL7 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VPS13AQ96RL7 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
VPS13AQ96RL7 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
VPS13AQ96RL7 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS13AQ96RL7 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS13AQ96RL7 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.04■□□□□ 0.8
VPS13AQ96RL7 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
VPS13AQ96RL7 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS13AQ96RL7 NIFKP9-201ENST00000419265 221 ntBASIC20.04■□□□□ 0.8
VPS13AQ96RL7 CD320-202ENST00000537716 1119 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS13AQ96RL7 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS13AQ96RL7 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS13AQ96RL7 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS13AQ96RL7 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS13AQ96RL7 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS13AQ96RL7 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VPS13AQ96RL7 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
VPS13AQ96RL7 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS13AQ96RL7 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS13AQ96RL7 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS13AQ96RL7 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.03■□□□□ 0.8
VPS13AQ96RL7 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS13AQ96RL7 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS13AQ96RL7 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS13AQ96RL7 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS13AQ96RL7 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS13AQ96RL7 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS13AQ96RL7 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
VPS13AQ96RL7 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS13AQ96RL7 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS13AQ96RL7 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS13AQ96RL7 AC117947.1-201ENST00000427448 529 ntBASIC20.03■□□□□ 0.8
VPS13AQ96RL7 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC20.03■□□□□ 0.8
VPS13AQ96RL7 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS13AQ96RL7 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS13AQ96RL7 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS13AQ96RL7 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS13AQ96RL7 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
VPS13AQ96RL7 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS13AQ96RL7 AC069148.1-201ENST00000608741 768 ntBASIC20.02■□□□□ 0.8
VPS13AQ96RL7 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.02■□□□□ 0.8
VPS13AQ96RL7 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS13AQ96RL7 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.02■□□□□ 0.8
VPS13AQ96RL7 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.8
VPS13AQ96RL7 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS13AQ96RL7 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS13AQ96RL7 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS13AQ96RL7 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS13AQ96RL7 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.02■□□□□ 0.8
VPS13AQ96RL7 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS13AQ96RL7 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS13AQ96RL7 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
VPS13AQ96RL7 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
VPS13AQ96RL7 AP005242.2-201ENST00000580065 1175 ntBASIC20.01■□□□□ 0.79
VPS13AQ96RL7 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VPS13AQ96RL7 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS13AQ96RL7 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.01■□□□□ 0.79
VPS13AQ96RL7 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VPS13AQ96RL7 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.01■□□□□ 0.79
VPS13AQ96RL7 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.01■□□□□ 0.79
VPS13AQ96RL7 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS13AQ96RL7 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.01■□□□□ 0.79
VPS13AQ96RL7 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS13AQ96RL7 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VPS13AQ96RL7 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.01■□□□□ 0.79
VPS13AQ96RL7 KRT18P16-201ENST00000510337 1294 ntBASIC20.01■□□□□ 0.79
VPS13AQ96RL7 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.01■□□□□ 0.79
VPS13AQ96RL7 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VPS13AQ96RL7 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS13AQ96RL7 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms