Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
CCDC42Q96M95 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC42Q96M95 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC42Q96M95 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.67■■□□□ 1.06
CCDC42Q96M95 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC21.67■■□□□ 1.06
CCDC42Q96M95 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.67■■□□□ 1.06
CCDC42Q96M95 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.67■■□□□ 1.06
CCDC42Q96M95 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
CCDC42Q96M95 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC42Q96M95 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
CCDC42Q96M95 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC42Q96M95 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC42Q96M95 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.67■■□□□ 1.06
CCDC42Q96M95 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC42Q96M95 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC42Q96M95 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC42Q96M95 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.66■■□□□ 1.06
CCDC42Q96M95 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.66■■□□□ 1.06
CCDC42Q96M95 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC42Q96M95 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC42Q96M95 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.66■■□□□ 1.06
CCDC42Q96M95 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.66■■□□□ 1.06
CCDC42Q96M95 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC42Q96M95 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC42Q96M95 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC42Q96M95 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.66■■□□□ 1.06
CCDC42Q96M95 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
CCDC42Q96M95 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC42Q96M95 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CCDC42Q96M95 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC42Q96M95 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC42Q96M95 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC21.65■■□□□ 1.06
CCDC42Q96M95 AC019069.1-201ENST00000610008 1333 ntBASIC21.65■■□□□ 1.06
CCDC42Q96M95 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC42Q96M95 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC42Q96M95 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC42Q96M95 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC42Q96M95 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC42Q96M95 CDV3P1-201ENST00000471403 739 ntBASIC21.65■■□□□ 1.06
CCDC42Q96M95 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC42Q96M95 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
CCDC42Q96M95 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.65■■□□□ 1.06
CCDC42Q96M95 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC42Q96M95 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC42Q96M95 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC42Q96M95 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC42Q96M95 AC004854.2-201ENST00000608450 1441 ntBASIC21.64■■□□□ 1.06
CCDC42Q96M95 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC21.64■■□□□ 1.06
CCDC42Q96M95 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.64■■□□□ 1.06
CCDC42Q96M95 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC21.64■■□□□ 1.05
CCDC42Q96M95 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC42Q96M95 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
CCDC42Q96M95 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.64■■□□□ 1.05
CCDC42Q96M95 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC21.64■■□□□ 1.05
CCDC42Q96M95 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC42Q96M95 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC42Q96M95 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
CCDC42Q96M95 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC42Q96M95 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
CCDC42Q96M95 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC42Q96M95 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC42Q96M95 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC42Q96M95 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
CCDC42Q96M95 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC21.64■■□□□ 1.05
CCDC42Q96M95 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC42Q96M95 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC42Q96M95 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC42Q96M95 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC42Q96M95 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC21.63■■□□□ 1.05
CCDC42Q96M95 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
CCDC42Q96M95 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC42Q96M95 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC21.63■■□□□ 1.05
CCDC42Q96M95 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC42Q96M95 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC42Q96M95 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC21.63■■□□□ 1.05
CCDC42Q96M95 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC21.63■■□□□ 1.05
CCDC42Q96M95 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.63■■□□□ 1.05
CCDC42Q96M95 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC42Q96M95 YBX1P1-201ENST00000445822 960 ntBASIC21.63■■□□□ 1.05
CCDC42Q96M95 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC42Q96M95 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC42Q96M95 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC42Q96M95 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC42Q96M95 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC42Q96M95 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC42Q96M95 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.63■■□□□ 1.05
CCDC42Q96M95 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
CCDC42Q96M95 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC42Q96M95 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC42Q96M95 CD37-204ENST00000535669 1674 ntTSL 2 BASIC21.63■■□□□ 1.05
CCDC42Q96M95 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC21.63■■□□□ 1.05
CCDC42Q96M95 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
CCDC42Q96M95 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.62■■□□□ 1.05
CCDC42Q96M95 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
CCDC42Q96M95 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.62■■□□□ 1.05
CCDC42Q96M95 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC42Q96M95 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
CCDC42Q96M95 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.62■■□□□ 1.05
CCDC42Q96M95 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.62■■□□□ 1.05
CCDC42Q96M95 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms