Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.57■□□□□ 0.88
SHROOM3Q8TF72 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHROOM3Q8TF72 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 LSM12P1-201ENST00000411836 588 ntBASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 TSPY6P-201ENST00000448518 926 ntBASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 AL589743.5-201ENST00000616611 1050 ntBASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
SHROOM3Q8TF72 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.55■□□□□ 0.88
SHROOM3Q8TF72 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.55■□□□□ 0.88
SHROOM3Q8TF72 MYC-209ENST00000641252 345 ntBASIC20.55■□□□□ 0.88
SHROOM3Q8TF72 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHROOM3Q8TF72 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHROOM3Q8TF72 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHROOM3Q8TF72 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHROOM3Q8TF72 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHROOM3Q8TF72 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHROOM3Q8TF72 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.55■□□□□ 0.88
SHROOM3Q8TF72 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHROOM3Q8TF72 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SHROOM3Q8TF72 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SHROOM3Q8TF72 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
SHROOM3Q8TF72 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SHROOM3Q8TF72 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SHROOM3Q8TF72 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM3Q8TF72 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM3Q8TF72 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.54■□□□□ 0.88
SHROOM3Q8TF72 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.54■□□□□ 0.88
SHROOM3Q8TF72 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.54■□□□□ 0.88
SHROOM3Q8TF72 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.54■□□□□ 0.88
SHROOM3Q8TF72 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM3Q8TF72 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM3Q8TF72 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM3Q8TF72 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM3Q8TF72 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM3Q8TF72 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM3Q8TF72 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SHROOM3Q8TF72 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM3Q8TF72 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM3Q8TF72 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SHROOM3Q8TF72 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.54■□□□□ 0.88
SHROOM3Q8TF72 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM3Q8TF72 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SHROOM3Q8TF72 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.54■□□□□ 0.88
SHROOM3Q8TF72 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20.54■□□□□ 0.88
SHROOM3Q8TF72 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SHROOM3Q8TF72 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.53■□□□□ 0.88
SHROOM3Q8TF72 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.53■□□□□ 0.88
SHROOM3Q8TF72 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
SHROOM3Q8TF72 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SHROOM3Q8TF72 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.53■□□□□ 0.88
SHROOM3Q8TF72 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SHROOM3Q8TF72 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.53■□□□□ 0.88
SHROOM3Q8TF72 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
SHROOM3Q8TF72 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHROOM3Q8TF72 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHROOM3Q8TF72 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SHROOM3Q8TF72 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.53■□□□□ 0.88
SHROOM3Q8TF72 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SHROOM3Q8TF72 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.53■□□□□ 0.88
SHROOM3Q8TF72 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHROOM3Q8TF72 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.53■□□□□ 0.88
SHROOM3Q8TF72 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SHROOM3Q8TF72 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SHROOM3Q8TF72 AC073210.2-201ENST00000430369 194 ntBASIC20.52■□□□□ 0.88
SHROOM3Q8TF72 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.52■□□□□ 0.88
SHROOM3Q8TF72 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.52■□□□□ 0.88
SHROOM3Q8TF72 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.52■□□□□ 0.88
SHROOM3Q8TF72 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.52■□□□□ 0.88
SHROOM3Q8TF72 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
SHROOM3Q8TF72 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.52■□□□□ 0.88
SHROOM3Q8TF72 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SHROOM3Q8TF72 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SHROOM3Q8TF72 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SHROOM3Q8TF72 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SHROOM3Q8TF72 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
SHROOM3Q8TF72 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SHROOM3Q8TF72 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.52■□□□□ 0.87
SHROOM3Q8TF72 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
SHROOM3Q8TF72 RNA5SP413-201ENST00000516373 109 ntBASIC20.52■□□□□ 0.87
SHROOM3Q8TF72 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.52■□□□□ 0.87
SHROOM3Q8TF72 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms