Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SH3RF1Q7Z6J0 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC23.1■■□□□ 1.29
SH3RF1Q7Z6J0 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
SH3RF1Q7Z6J0 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SH3RF1Q7Z6J0 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC23.1■■□□□ 1.29
SH3RF1Q7Z6J0 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
SH3RF1Q7Z6J0 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC23.1■■□□□ 1.29
SH3RF1Q7Z6J0 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC23.1■■□□□ 1.29
SH3RF1Q7Z6J0 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
SH3RF1Q7Z6J0 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC23.1■■□□□ 1.29
SH3RF1Q7Z6J0 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
SH3RF1Q7Z6J0 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
SH3RF1Q7Z6J0 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SH3RF1Q7Z6J0 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
SH3RF1Q7Z6J0 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC23.09■■□□□ 1.29
SH3RF1Q7Z6J0 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
SH3RF1Q7Z6J0 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC23.09■■□□□ 1.29
SH3RF1Q7Z6J0 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SH3RF1Q7Z6J0 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC23.09■■□□□ 1.29
SH3RF1Q7Z6J0 MDFI-202ENST00000373050 809 ntTSL 2 BASIC23.09■■□□□ 1.29
SH3RF1Q7Z6J0 AC091799.1-201ENST00000422823 811 ntBASIC23.09■■□□□ 1.29
SH3RF1Q7Z6J0 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC23.09■■□□□ 1.29
SH3RF1Q7Z6J0 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC23.09■■□□□ 1.29
SH3RF1Q7Z6J0 BX088651.1-201ENST00000540551 451 ntBASIC23.09■■□□□ 1.29
SH3RF1Q7Z6J0 AC069544.1-201ENST00000609399 999 ntBASIC23.09■■□□□ 1.29
SH3RF1Q7Z6J0 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
SH3RF1Q7Z6J0 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC23.09■■□□□ 1.29
SH3RF1Q7Z6J0 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
SH3RF1Q7Z6J0 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
SH3RF1Q7Z6J0 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
SH3RF1Q7Z6J0 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
SH3RF1Q7Z6J0 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
SH3RF1Q7Z6J0 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
SH3RF1Q7Z6J0 SLC29A4P2-201ENST00000504749 1089 ntBASIC23.08■■□□□ 1.29
SH3RF1Q7Z6J0 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
SH3RF1Q7Z6J0 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC23.08■■□□□ 1.29
SH3RF1Q7Z6J0 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SH3RF1Q7Z6J0 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC23.08■■□□□ 1.29
SH3RF1Q7Z6J0 FAM21FP-204ENST00000608637 956 ntBASIC23.08■■□□□ 1.29
SH3RF1Q7Z6J0 STAC-204ENST00000457375 1366 ntTSL 2 BASIC23.08■■□□□ 1.29
SH3RF1Q7Z6J0 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
SH3RF1Q7Z6J0 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC23.08■■□□□ 1.29
SH3RF1Q7Z6J0 AL162377.1-201ENST00000618844 1793 ntBASIC23.08■■□□□ 1.29
SH3RF1Q7Z6J0 DET1-207ENST00000564406 2315 ntTSL 2 BASIC23.08■■□□□ 1.28
SH3RF1Q7Z6J0 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
SH3RF1Q7Z6J0 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC23.08■■□□□ 1.28
SH3RF1Q7Z6J0 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC23.08■■□□□ 1.28
SH3RF1Q7Z6J0 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC23.08■■□□□ 1.28
SH3RF1Q7Z6J0 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC23.07■■□□□ 1.28
SH3RF1Q7Z6J0 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
SH3RF1Q7Z6J0 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SH3RF1Q7Z6J0 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC23.07■■□□□ 1.28
SH3RF1Q7Z6J0 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SH3RF1Q7Z6J0 AC245052.3-201ENST00000450182 901 ntBASIC23.07■■□□□ 1.28
SH3RF1Q7Z6J0 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC23.07■■□□□ 1.28
SH3RF1Q7Z6J0 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SH3RF1Q7Z6J0 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC23.07■■□□□ 1.28
SH3RF1Q7Z6J0 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SH3RF1Q7Z6J0 SOX15-203ENST00000570788 1093 ntBASIC23.07■■□□□ 1.28
SH3RF1Q7Z6J0 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SH3RF1Q7Z6J0 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SH3RF1Q7Z6J0 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC23.07■■□□□ 1.28
SH3RF1Q7Z6J0 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SH3RF1Q7Z6J0 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SH3RF1Q7Z6J0 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
SH3RF1Q7Z6J0 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC23.06■■□□□ 1.28
SH3RF1Q7Z6J0 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SH3RF1Q7Z6J0 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC23.06■■□□□ 1.28
SH3RF1Q7Z6J0 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC23.06■■□□□ 1.28
SH3RF1Q7Z6J0 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC23.06■■□□□ 1.28
SH3RF1Q7Z6J0 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
SH3RF1Q7Z6J0 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
SH3RF1Q7Z6J0 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SH3RF1Q7Z6J0 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SH3RF1Q7Z6J0 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC23.06■■□□□ 1.28
SH3RF1Q7Z6J0 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
SH3RF1Q7Z6J0 REXO2-216ENST00000544196 452 ntTSL 3 BASIC23.06■■□□□ 1.28
SH3RF1Q7Z6J0 AC100791.3-201ENST00000617619 330 ntBASIC23.06■■□□□ 1.28
SH3RF1Q7Z6J0 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SH3RF1Q7Z6J0 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SH3RF1Q7Z6J0 AL121603.2-201ENST00000557373 2117 ntBASIC23.06■■□□□ 1.28
SH3RF1Q7Z6J0 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC23.06■■□□□ 1.28
SH3RF1Q7Z6J0 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
SH3RF1Q7Z6J0 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SH3RF1Q7Z6J0 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
SH3RF1Q7Z6J0 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
SH3RF1Q7Z6J0 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC23.05■■□□□ 1.28
SH3RF1Q7Z6J0 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC23.05■■□□□ 1.28
SH3RF1Q7Z6J0 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC23.05■■□□□ 1.28
SH3RF1Q7Z6J0 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SH3RF1Q7Z6J0 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SH3RF1Q7Z6J0 TSPY7P-201ENST00000431358 1114 ntBASIC23.05■■□□□ 1.28
SH3RF1Q7Z6J0 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC23.05■■□□□ 1.28
SH3RF1Q7Z6J0 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SH3RF1Q7Z6J0 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC23.05■■□□□ 1.28
SH3RF1Q7Z6J0 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SH3RF1Q7Z6J0 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SH3RF1Q7Z6J0 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SH3RF1Q7Z6J0 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC23.05■■□□□ 1.28
SH3RF1Q7Z6J0 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC23.05■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms