Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NCBP3Q53F19 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
NCBP3Q53F19 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC26.35■■□□□ 1.81
NCBP3Q53F19 HLA-L-209ENST00000420110 1011 ntBASIC26.35■■□□□ 1.81
NCBP3Q53F19 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC26.35■■□□□ 1.81
NCBP3Q53F19 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC26.35■■□□□ 1.81
NCBP3Q53F19 BET1L-207ENST00000529614 560 ntTSL 5 BASIC26.35■■□□□ 1.81
NCBP3Q53F19 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC26.35■■□□□ 1.81
NCBP3Q53F19 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NCBP3Q53F19 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
NCBP3Q53F19 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
NCBP3Q53F19 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NCBP3Q53F19 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC26.34■■□□□ 1.81
NCBP3Q53F19 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC26.34■■□□□ 1.81
NCBP3Q53F19 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC26.34■■□□□ 1.81
NCBP3Q53F19 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
NCBP3Q53F19 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC26.34■■□□□ 1.81
NCBP3Q53F19 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC26.34■■□□□ 1.81
NCBP3Q53F19 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
NCBP3Q53F19 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NCBP3Q53F19 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NCBP3Q53F19 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NCBP3Q53F19 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
NCBP3Q53F19 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NCBP3Q53F19 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC26.34■■□□□ 1.81
NCBP3Q53F19 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
NCBP3Q53F19 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NCBP3Q53F19 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC26.34■■□□□ 1.81
NCBP3Q53F19 RGMA-211ENST00000557420 989 ntTSL 3 BASIC26.34■■□□□ 1.81
NCBP3Q53F19 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
NCBP3Q53F19 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC26.34■■□□□ 1.81
NCBP3Q53F19 AC083880.1-201ENST00000608266 535 ntBASIC26.34■■□□□ 1.81
NCBP3Q53F19 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
NCBP3Q53F19 USP39-204ENST00000409766 2033 ntTSL 2 BASIC26.34■■□□□ 1.81
NCBP3Q53F19 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC26.34■■□□□ 1.81
NCBP3Q53F19 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC26.34■■□□□ 1.81
NCBP3Q53F19 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC26.34■■□□□ 1.81
NCBP3Q53F19 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.81
NCBP3Q53F19 AC099778.1-201ENST00000568593 1911 ntBASIC26.33■■□□□ 1.81
NCBP3Q53F19 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
NCBP3Q53F19 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
NCBP3Q53F19 SMG8-203ENST00000578922 2178 ntBASIC26.33■■□□□ 1.81
NCBP3Q53F19 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
NCBP3Q53F19 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC26.33■■□□□ 1.81
NCBP3Q53F19 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC26.33■■□□□ 1.81
NCBP3Q53F19 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
NCBP3Q53F19 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC26.33■■□□□ 1.81
NCBP3Q53F19 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC26.33■■□□□ 1.81
NCBP3Q53F19 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
NCBP3Q53F19 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
NCBP3Q53F19 AC005829.2-201ENST00000571422 1056 ntBASIC26.33■■□□□ 1.81
NCBP3Q53F19 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC26.33■■□□□ 1.81
NCBP3Q53F19 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC26.33■■□□□ 1.81
NCBP3Q53F19 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC26.33■■□□□ 1.81
NCBP3Q53F19 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
NCBP3Q53F19 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC26.33■■□□□ 1.81
NCBP3Q53F19 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC26.33■■□□□ 1.81
NCBP3Q53F19 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
NCBP3Q53F19 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC26.33■■□□□ 1.8
NCBP3Q53F19 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
NCBP3Q53F19 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
NCBP3Q53F19 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
NCBP3Q53F19 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC26.32■■□□□ 1.8
NCBP3Q53F19 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
NCBP3Q53F19 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NCBP3Q53F19 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NCBP3Q53F19 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC26.32■■□□□ 1.8
NCBP3Q53F19 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
NCBP3Q53F19 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC26.32■■□□□ 1.8
NCBP3Q53F19 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC26.32■■□□□ 1.8
NCBP3Q53F19 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC26.32■■□□□ 1.8
NCBP3Q53F19 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
NCBP3Q53F19 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NCBP3Q53F19 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NCBP3Q53F19 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
NCBP3Q53F19 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
NCBP3Q53F19 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC26.31■■□□□ 1.8
NCBP3Q53F19 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
NCBP3Q53F19 HLA-G-202ENST00000376815 851 ntBASIC26.31■■□□□ 1.8
NCBP3Q53F19 HLA-G-203ENST00000376818 1127 ntBASIC26.31■■□□□ 1.8
NCBP3Q53F19 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NCBP3Q53F19 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
NCBP3Q53F19 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC26.31■■□□□ 1.8
NCBP3Q53F19 AC098934.4-201ENST00000564127 592 ntBASIC26.31■■□□□ 1.8
NCBP3Q53F19 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC26.31■■□□□ 1.8
NCBP3Q53F19 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC26.31■■□□□ 1.8
NCBP3Q53F19 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC26.31■■□□□ 1.8
NCBP3Q53F19 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC26.31■■□□□ 1.8
NCBP3Q53F19 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
NCBP3Q53F19 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
NCBP3Q53F19 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
NCBP3Q53F19 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NCBP3Q53F19 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
NCBP3Q53F19 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
NCBP3Q53F19 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NCBP3Q53F19 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC26.3■■□□□ 1.8
NCBP3Q53F19 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC26.3■■□□□ 1.8
NCBP3Q53F19 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NCBP3Q53F19 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
NCBP3Q53F19 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms