Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
SHROOM1Q2M3G4 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
SHROOM1Q2M3G4 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SHROOM1Q2M3G4 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
SHROOM1Q2M3G4 AC005229.4-201ENST00000610085 2198 ntBASIC23.59■■□□□ 1.37
SHROOM1Q2M3G4 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC23.59■■□□□ 1.37
SHROOM1Q2M3G4 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SHROOM1Q2M3G4 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
SHROOM1Q2M3G4 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC23.59■■□□□ 1.37
SHROOM1Q2M3G4 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SHROOM1Q2M3G4 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SHROOM1Q2M3G4 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
SHROOM1Q2M3G4 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC23.59■■□□□ 1.37
SHROOM1Q2M3G4 AL355075.4-201ENST00000554988 638 ntBASIC23.59■■□□□ 1.37
SHROOM1Q2M3G4 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC23.59■■□□□ 1.37
SHROOM1Q2M3G4 FP700111.2-201ENST00000619190 1892 ntBASIC23.59■■□□□ 1.37
SHROOM1Q2M3G4 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
SHROOM1Q2M3G4 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
SHROOM1Q2M3G4 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SHROOM1Q2M3G4 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC23.59■■□□□ 1.37
SHROOM1Q2M3G4 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
SHROOM1Q2M3G4 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
SHROOM1Q2M3G4 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
SHROOM1Q2M3G4 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC23.58■■□□□ 1.37
SHROOM1Q2M3G4 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
SHROOM1Q2M3G4 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC23.58■■□□□ 1.37
SHROOM1Q2M3G4 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
SHROOM1Q2M3G4 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
SHROOM1Q2M3G4 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC23.58■■□□□ 1.37
SHROOM1Q2M3G4 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
SHROOM1Q2M3G4 RPS20-210ENST00000523936 899 ntTSL 2 BASIC23.58■■□□□ 1.37
SHROOM1Q2M3G4 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC23.58■■□□□ 1.37
SHROOM1Q2M3G4 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC23.58■■□□□ 1.37
SHROOM1Q2M3G4 RARRES2P10-201ENST00000564312 460 ntBASIC23.58■■□□□ 1.37
SHROOM1Q2M3G4 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC23.58■■□□□ 1.37
SHROOM1Q2M3G4 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
SHROOM1Q2M3G4 AL121829.2-201ENST00000620908 328 ntBASIC23.58■■□□□ 1.37
SHROOM1Q2M3G4 CABP2-204ENST00000636477 941 ntTSL 5 BASIC23.58■■□□□ 1.37
SHROOM1Q2M3G4 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
SHROOM1Q2M3G4 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
SHROOM1Q2M3G4 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
SHROOM1Q2M3G4 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC23.58■■□□□ 1.36
SHROOM1Q2M3G4 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC23.58■■□□□ 1.36
SHROOM1Q2M3G4 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
SHROOM1Q2M3G4 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
SHROOM1Q2M3G4 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC23.57■■□□□ 1.36
SHROOM1Q2M3G4 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
SHROOM1Q2M3G4 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
SHROOM1Q2M3G4 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
SHROOM1Q2M3G4 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
SHROOM1Q2M3G4 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC23.57■■□□□ 1.36
SHROOM1Q2M3G4 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC23.57■■□□□ 1.36
SHROOM1Q2M3G4 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC23.57■■□□□ 1.36
SHROOM1Q2M3G4 PNN-205ENST00000556530 601 ntTSL 2 BASIC23.57■■□□□ 1.36
SHROOM1Q2M3G4 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC23.57■■□□□ 1.36
SHROOM1Q2M3G4 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
SHROOM1Q2M3G4 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
SHROOM1Q2M3G4 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC23.57■■□□□ 1.36
SHROOM1Q2M3G4 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC23.57■■□□□ 1.36
SHROOM1Q2M3G4 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
SHROOM1Q2M3G4 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC23.56■■□□□ 1.36
SHROOM1Q2M3G4 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SHROOM1Q2M3G4 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SHROOM1Q2M3G4 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
SHROOM1Q2M3G4 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC23.56■■□□□ 1.36
SHROOM1Q2M3G4 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC23.56■■□□□ 1.36
SHROOM1Q2M3G4 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC23.56■■□□□ 1.36
SHROOM1Q2M3G4 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC23.56■■□□□ 1.36
SHROOM1Q2M3G4 GRAP-204ENST00000573099 846 ntTSL 3 BASIC23.56■■□□□ 1.36
SHROOM1Q2M3G4 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC23.56■■□□□ 1.36
SHROOM1Q2M3G4 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SHROOM1Q2M3G4 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SHROOM1Q2M3G4 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SHROOM1Q2M3G4 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC23.56■■□□□ 1.36
SHROOM1Q2M3G4 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
SHROOM1Q2M3G4 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
SHROOM1Q2M3G4 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC23.56■■□□□ 1.36
SHROOM1Q2M3G4 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
SHROOM1Q2M3G4 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
SHROOM1Q2M3G4 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
SHROOM1Q2M3G4 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC23.55■■□□□ 1.36
SHROOM1Q2M3G4 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
SHROOM1Q2M3G4 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
SHROOM1Q2M3G4 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
SHROOM1Q2M3G4 SAPCD2P4-201ENST00000424595 1171 ntBASIC23.55■■□□□ 1.36
SHROOM1Q2M3G4 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC23.55■■□□□ 1.36
SHROOM1Q2M3G4 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC23.55■■□□□ 1.36
SHROOM1Q2M3G4 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC23.55■■□□□ 1.36
SHROOM1Q2M3G4 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
SHROOM1Q2M3G4 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
SHROOM1Q2M3G4 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC23.54■■□□□ 1.36
SHROOM1Q2M3G4 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
SHROOM1Q2M3G4 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
SHROOM1Q2M3G4 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC23.54■■□□□ 1.36
SHROOM1Q2M3G4 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC23.54■■□□□ 1.36
SHROOM1Q2M3G4 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC23.54■■□□□ 1.36
SHROOM1Q2M3G4 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
SHROOM1Q2M3G4 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC23.54■■□□□ 1.36
SHROOM1Q2M3G4 NBPF21P-201ENST00000425093 1451 ntBASIC23.54■■□□□ 1.36
SHROOM1Q2M3G4 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC23.54■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms