Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
FOXA1P55317 AC087289.5-201ENST00000586076 3175 ntBASIC19.48■□□□□ 0.71
FOXA1P55317 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
FOXA1P55317 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.48■□□□□ 0.71
FOXA1P55317 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
FOXA1P55317 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
FOXA1P55317 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.48■□□□□ 0.71
FOXA1P55317 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.48■□□□□ 0.71
FOXA1P55317 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.48■□□□□ 0.71
FOXA1P55317 AC034268.1-201ENST00000441047 882 ntBASIC19.48■□□□□ 0.71
FOXA1P55317 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.48■□□□□ 0.71
FOXA1P55317 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.48■□□□□ 0.71
FOXA1P55317 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
FOXA1P55317 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
FOXA1P55317 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.48■□□□□ 0.71
FOXA1P55317 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.48■□□□□ 0.71
FOXA1P55317 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
FOXA1P55317 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.48■□□□□ 0.71
FOXA1P55317 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
FOXA1P55317 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
FOXA1P55317 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
FOXA1P55317 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
FOXA1P55317 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.47■□□□□ 0.71
FOXA1P55317 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
FOXA1P55317 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
FOXA1P55317 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.47■□□□□ 0.71
FOXA1P55317 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
FOXA1P55317 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
FOXA1P55317 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.47■□□□□ 0.71
FOXA1P55317 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.47■□□□□ 0.71
FOXA1P55317 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.47■□□□□ 0.71
FOXA1P55317 AC087623.3-201ENST00000607047 1098 ntBASIC19.47■□□□□ 0.71
FOXA1P55317 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
FOXA1P55317 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.47■□□□□ 0.71
FOXA1P55317 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXA1P55317 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
FOXA1P55317 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXA1P55317 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
FOXA1P55317 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXA1P55317 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXA1P55317 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
FOXA1P55317 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXA1P55317 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXA1P55317 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.46■□□□□ 0.71
FOXA1P55317 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.46■□□□□ 0.71
FOXA1P55317 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.46■□□□□ 0.71
FOXA1P55317 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.46■□□□□ 0.71
FOXA1P55317 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
FOXA1P55317 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
FOXA1P55317 TMEM179-206ENST00000616017 1645 ntBASIC19.46■□□□□ 0.71
FOXA1P55317 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.46■□□□□ 0.71
FOXA1P55317 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXA1P55317 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
FOXA1P55317 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.46■□□□□ 0.71
FOXA1P55317 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.46■□□□□ 0.71
FOXA1P55317 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.46■□□□□ 0.71
FOXA1P55317 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.46■□□□□ 0.71
FOXA1P55317 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXA1P55317 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXA1P55317 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
FOXA1P55317 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXA1P55317 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXA1P55317 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXA1P55317 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXA1P55317 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXA1P55317 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXA1P55317 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
FOXA1P55317 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXA1P55317 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXA1P55317 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXA1P55317 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.45■□□□□ 0.7
FOXA1P55317 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.45■□□□□ 0.7
FOXA1P55317 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.45■□□□□ 0.7
FOXA1P55317 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXA1P55317 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.45■□□□□ 0.7
FOXA1P55317 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.45■□□□□ 0.7
FOXA1P55317 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.45■□□□□ 0.7
FOXA1P55317 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXA1P55317 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
FOXA1P55317 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXA1P55317 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
FOXA1P55317 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.44■□□□□ 0.7
FOXA1P55317 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
FOXA1P55317 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
FOXA1P55317 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
FOXA1P55317 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.44■□□□□ 0.7
FOXA1P55317 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
FOXA1P55317 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
FOXA1P55317 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.44■□□□□ 0.7
FOXA1P55317 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
FOXA1P55317 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
FOXA1P55317 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
FOXA1P55317 MIR6821-201ENST00000617625 74 ntBASIC19.44■□□□□ 0.7
FOXA1P55317 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
FOXA1P55317 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
FOXA1P55317 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
FOXA1P55317 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
FOXA1P55317 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
FOXA1P55317 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
FOXA1P55317 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms