Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
RPA3P35244 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.3■□□□□ 0.84
RPA3P35244 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
RPA3P35244 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
RPA3P35244 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RPA3P35244 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RPA3P35244 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RPA3P35244 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.3■□□□□ 0.84
RPA3P35244 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
RPA3P35244 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RPA3P35244 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RPA3P35244 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.29■□□□□ 0.84
RPA3P35244 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPA3P35244 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPA3P35244 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.29■□□□□ 0.84
RPA3P35244 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPA3P35244 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.29■□□□□ 0.84
RPA3P35244 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RPA3P35244 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.29■□□□□ 0.84
RPA3P35244 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPA3P35244 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.29■□□□□ 0.84
RPA3P35244 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPA3P35244 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.29■□□□□ 0.84
RPA3P35244 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.29■□□□□ 0.84
RPA3P35244 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPA3P35244 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RPA3P35244 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
RPA3P35244 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RPA3P35244 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
RPA3P35244 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RPA3P35244 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RPA3P35244 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RPA3P35244 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RPA3P35244 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RPA3P35244 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RPA3P35244 AC016769.1-201ENST00000409132 1010 ntBASIC20.28■□□□□ 0.84
RPA3P35244 KRT18P20-201ENST00000548986 1279 ntBASIC20.28■□□□□ 0.84
RPA3P35244 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.28■□□□□ 0.84
RPA3P35244 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RPA3P35244 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
RPA3P35244 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.28■□□□□ 0.84
RPA3P35244 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RPA3P35244 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RPA3P35244 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RPA3P35244 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPA3P35244 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
RPA3P35244 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
RPA3P35244 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPA3P35244 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.27■□□□□ 0.84
RPA3P35244 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.27■□□□□ 0.84
RPA3P35244 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPA3P35244 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPA3P35244 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
RPA3P35244 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPA3P35244 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPA3P35244 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.27■□□□□ 0.84
RPA3P35244 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPA3P35244 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.27■□□□□ 0.84
RPA3P35244 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.27■□□□□ 0.84
RPA3P35244 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.27■□□□□ 0.84
RPA3P35244 RARRES2P11-201ENST00000635158 484 ntBASIC20.27■□□□□ 0.84
RPA3P35244 MIR2861-201ENST00000636310 90 ntBASIC20.27■□□□□ 0.84
RPA3P35244 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
RPA3P35244 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPA3P35244 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RPA3P35244 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
RPA3P35244 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.27■□□□□ 0.83
RPA3P35244 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
RPA3P35244 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
RPA3P35244 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.27■□□□□ 0.83
RPA3P35244 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.27■□□□□ 0.83
RPA3P35244 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
RPA3P35244 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RPA3P35244 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
RPA3P35244 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
RPA3P35244 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RPA3P35244 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RPA3P35244 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
RPA3P35244 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.26■□□□□ 0.83
RPA3P35244 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RPA3P35244 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.26■□□□□ 0.83
RPA3P35244 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.26■□□□□ 0.83
RPA3P35244 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
RPA3P35244 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RPA3P35244 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
RPA3P35244 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
RPA3P35244 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RPA3P35244 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.26■□□□□ 0.83
RPA3P35244 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RPA3P35244 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
RPA3P35244 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
RPA3P35244 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RPA3P35244 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RPA3P35244 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RPA3P35244 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
RPA3P35244 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
RPA3P35244 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.25■□□□□ 0.83
RPA3P35244 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
RPA3P35244 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
RPA3P35244 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms