Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC19.69■□□□□ 0.74
SHMT2P34897 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.69■□□□□ 0.74
SHMT2P34897 AC083880.1-201ENST00000608266 535 ntBASIC19.69■□□□□ 0.74
SHMT2P34897 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
SHMT2P34897 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHMT2P34897 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHMT2P34897 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SHMT2P34897 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SHMT2P34897 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHMT2P34897 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SHMT2P34897 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.68■□□□□ 0.74
SHMT2P34897 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.68■□□□□ 0.74
SHMT2P34897 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
SHMT2P34897 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SHMT2P34897 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHMT2P34897 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHMT2P34897 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHMT2P34897 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHMT2P34897 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHMT2P34897 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHMT2P34897 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SHMT2P34897 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.68■□□□□ 0.74
SHMT2P34897 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.68■□□□□ 0.74
SHMT2P34897 C2orf69P4-201ENST00000565394 541 ntBASIC19.68■□□□□ 0.74
SHMT2P34897 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SHMT2P34897 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.68■□□□□ 0.74
SHMT2P34897 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
SHMT2P34897 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
SHMT2P34897 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHMT2P34897 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHMT2P34897 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHMT2P34897 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
SHMT2P34897 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SHMT2P34897 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
SHMT2P34897 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHMT2P34897 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHMT2P34897 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
SHMT2P34897 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
SHMT2P34897 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC19.67■□□□□ 0.74
SHMT2P34897 KRT18P6-201ENST00000555540 1265 ntBASIC19.67■□□□□ 0.74
SHMT2P34897 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.67■□□□□ 0.74
SHMT2P34897 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.67■□□□□ 0.74
SHMT2P34897 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.67■□□□□ 0.74
SHMT2P34897 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.67■□□□□ 0.74
SHMT2P34897 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.67■□□□□ 0.74
SHMT2P34897 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHMT2P34897 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.67■□□□□ 0.74
SHMT2P34897 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.67■□□□□ 0.74
SHMT2P34897 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHMT2P34897 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.67■□□□□ 0.74
SHMT2P34897 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.67■□□□□ 0.74
SHMT2P34897 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHMT2P34897 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHMT2P34897 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHMT2P34897 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SHMT2P34897 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SHMT2P34897 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHMT2P34897 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.66■□□□□ 0.74
SHMT2P34897 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHMT2P34897 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
SHMT2P34897 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.66■□□□□ 0.74
SHMT2P34897 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SHMT2P34897 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SHMT2P34897 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.66■□□□□ 0.74
SHMT2P34897 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.66■□□□□ 0.74
SHMT2P34897 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.66■□□□□ 0.74
SHMT2P34897 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHMT2P34897 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHMT2P34897 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHMT2P34897 FP700111.2-201ENST00000619190 1892 ntBASIC19.66■□□□□ 0.74
SHMT2P34897 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
SHMT2P34897 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHMT2P34897 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHMT2P34897 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.65■□□□□ 0.74
SHMT2P34897 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHMT2P34897 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHMT2P34897 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SHMT2P34897 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHMT2P34897 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SHMT2P34897 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHMT2P34897 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHMT2P34897 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHMT2P34897 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.65■□□□□ 0.74
SHMT2P34897 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHMT2P34897 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHMT2P34897 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHMT2P34897 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SHMT2P34897 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SHMT2P34897 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.65■□□□□ 0.74
SHMT2P34897 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.65■□□□□ 0.74
SHMT2P34897 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SHMT2P34897 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
SHMT2P34897 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.65■□□□□ 0.74
SHMT2P34897 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.65■□□□□ 0.74
SHMT2P34897 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHMT2P34897 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SHMT2P34897 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHMT2P34897 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.65■□□□□ 0.74
SHMT2P34897 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.65■□□□□ 0.74
SHMT2P34897 AC007225.1-201ENST00000566331 1836 ntBASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms