Protein–RNA interactions for Protein: P25942

CD40, Tumor necrosis factor receptor superfamily member 5, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD40P25942 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CD40P25942 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CD40P25942 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC17.38■□□□□ 0.37
CD40P25942 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CD40P25942 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CD40P25942 AC007225.1-201ENST00000566331 1836 ntBASIC17.38■□□□□ 0.37
CD40P25942 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CD40P25942 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC17.38■□□□□ 0.37
CD40P25942 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC17.38■□□□□ 0.37
CD40P25942 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC17.38■□□□□ 0.37
CD40P25942 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.38■□□□□ 0.37
CD40P25942 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
CD40P25942 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.38■□□□□ 0.37
CD40P25942 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CD40P25942 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.38■□□□□ 0.37
CD40P25942 HES2-206ENST00000489730 730 ntTSL 2 BASIC17.38■□□□□ 0.37
CD40P25942 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC17.38■□□□□ 0.37
CD40P25942 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.38■□□□□ 0.37
CD40P25942 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.38■□□□□ 0.37
CD40P25942 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CD40P25942 MTDHP1-201ENST00000605323 784 ntBASIC17.38■□□□□ 0.37
CD40P25942 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CD40P25942 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CD40P25942 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC17.38■□□□□ 0.37
CD40P25942 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CD40P25942 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CD40P25942 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CD40P25942 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CD40P25942 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CD40P25942 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
CD40P25942 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CD40P25942 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CD40P25942 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CD40P25942 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CD40P25942 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CD40P25942 HLA-G-202ENST00000376815 851 ntBASIC17.37■□□□□ 0.37
CD40P25942 HLA-G-203ENST00000376818 1127 ntBASIC17.37■□□□□ 0.37
CD40P25942 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CD40P25942 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.37■□□□□ 0.37
CD40P25942 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CD40P25942 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CD40P25942 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.37■□□□□ 0.37
CD40P25942 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.37■□□□□ 0.37
CD40P25942 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC17.37■□□□□ 0.37
CD40P25942 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CD40P25942 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CD40P25942 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CD40P25942 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CD40P25942 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CD40P25942 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CD40P25942 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.36■□□□□ 0.37
CD40P25942 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC17.36■□□□□ 0.37
CD40P25942 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CD40P25942 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.36■□□□□ 0.37
CD40P25942 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC17.36■□□□□ 0.37
CD40P25942 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.36■□□□□ 0.37
CD40P25942 RHOD-202ENST00000532559 538 ntTSL 3 BASIC17.36■□□□□ 0.37
CD40P25942 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CD40P25942 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.36■□□□□ 0.37
CD40P25942 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.36■□□□□ 0.37
CD40P25942 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
CD40P25942 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CD40P25942 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CD40P25942 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CD40P25942 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CD40P25942 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CD40P25942 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CD40P25942 PTBP1P-201ENST00000554374 1601 ntBASIC17.36■□□□□ 0.37
CD40P25942 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CD40P25942 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CD40P25942 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CD40P25942 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CD40P25942 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CD40P25942 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CD40P25942 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CD40P25942 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CD40P25942 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.35■□□□□ 0.37
CD40P25942 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CD40P25942 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.35■□□□□ 0.37
CD40P25942 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.35■□□□□ 0.37
CD40P25942 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC17.35■□□□□ 0.37
CD40P25942 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CD40P25942 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CD40P25942 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
CD40P25942 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CD40P25942 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CD40P25942 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
CD40P25942 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC17.35■□□□□ 0.37
CD40P25942 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CD40P25942 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CD40P25942 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC17.35■□□□□ 0.37
CD40P25942 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CD40P25942 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CD40P25942 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CD40P25942 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CD40P25942 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CD40P25942 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CD40P25942 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CD40P25942 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CD40P25942 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms