Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF1P22415 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF1P22415 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USF1P22415 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
USF1P22415 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
USF1P22415 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USF1P22415 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC17.02■□□□□ 0.32
USF1P22415 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
USF1P22415 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.02■□□□□ 0.32
USF1P22415 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
USF1P22415 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USF1P22415 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USF1P22415 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
USF1P22415 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USF1P22415 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
USF1P22415 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
USF1P22415 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USF1P22415 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USF1P22415 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
USF1P22415 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
USF1P22415 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC17.02■□□□□ 0.32
USF1P22415 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
USF1P22415 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.02■□□□□ 0.32
USF1P22415 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
USF1P22415 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.02■□□□□ 0.32
USF1P22415 AC073912.3-201ENST00000624414 853 ntBASIC17.02■□□□□ 0.32
USF1P22415 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC17.02■□□□□ 0.32
USF1P22415 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
USF1P22415 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
USF1P22415 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC17.02■□□□□ 0.31
USF1P22415 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
USF1P22415 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.02■□□□□ 0.31
USF1P22415 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
USF1P22415 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC17.01■□□□□ 0.31
USF1P22415 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USF1P22415 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
USF1P22415 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF1P22415 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF1P22415 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF1P22415 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF1P22415 AC005229.4-201ENST00000610085 2198 ntBASIC17.01■□□□□ 0.31
USF1P22415 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF1P22415 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF1P22415 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF1P22415 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USF1P22415 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
USF1P22415 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USF1P22415 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USF1P22415 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
USF1P22415 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF1P22415 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF1P22415 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.01■□□□□ 0.31
USF1P22415 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
USF1P22415 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USF1P22415 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
USF1P22415 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USF1P22415 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
USF1P22415 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC17■□□□□ 0.31
USF1P22415 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC17■□□□□ 0.31
USF1P22415 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
USF1P22415 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
USF1P22415 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC17■□□□□ 0.31
USF1P22415 AL390719.1-204ENST00000412397 1219 ntBASIC17■□□□□ 0.31
USF1P22415 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC17■□□□□ 0.31
USF1P22415 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17■□□□□ 0.31
USF1P22415 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
USF1P22415 GXYLT1P3-201ENST00000453058 1193 ntBASIC17■□□□□ 0.31
USF1P22415 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17■□□□□ 0.31
USF1P22415 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17■□□□□ 0.31
USF1P22415 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17■□□□□ 0.31
USF1P22415 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
USF1P22415 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC17■□□□□ 0.31
USF1P22415 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC16.99■□□□□ 0.31
USF1P22415 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC16.99■□□□□ 0.31
USF1P22415 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
USF1P22415 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
USF1P22415 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
USF1P22415 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
USF1P22415 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
USF1P22415 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
USF1P22415 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
USF1P22415 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
USF1P22415 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
USF1P22415 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
USF1P22415 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
USF1P22415 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
USF1P22415 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
USF1P22415 AC012618.2-201ENST00000428058 849 ntBASIC16.99■□□□□ 0.31
USF1P22415 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC16.99■□□□□ 0.31
USF1P22415 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
USF1P22415 THEM4-205ENST00000489410 643 ntTSL 2 BASIC16.99■□□□□ 0.31
USF1P22415 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC16.99■□□□□ 0.31
USF1P22415 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
USF1P22415 KLF2-202ENST00000592003 564 ntTSL 3 BASIC16.99■□□□□ 0.31
USF1P22415 MTDHP1-201ENST00000605323 784 ntBASIC16.99■□□□□ 0.31
USF1P22415 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
USF1P22415 AC120498.8-201ENST00000614275 531 ntBASIC16.99■□□□□ 0.31
USF1P22415 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
USF1P22415 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
USF1P22415 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms