Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
CSB-PGBD3P0DP91 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
CSB-PGBD3P0DP91 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC26.79■■□□□ 1.88
CSB-PGBD3P0DP91 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC26.79■■□□□ 1.88
CSB-PGBD3P0DP91 RMI2-205ENST00000576027 818 ntTSL 2 BASIC26.79■■□□□ 1.88
CSB-PGBD3P0DP91 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC26.79■■□□□ 1.88
CSB-PGBD3P0DP91 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC26.79■■□□□ 1.88
CSB-PGBD3P0DP91 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
CSB-PGBD3P0DP91 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
CSB-PGBD3P0DP91 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CSB-PGBD3P0DP91 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC26.79■■□□□ 1.88
CSB-PGBD3P0DP91 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC26.79■■□□□ 1.88
CSB-PGBD3P0DP91 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC26.79■■□□□ 1.88
CSB-PGBD3P0DP91 AC233723.2-201ENST00000623798 2106 ntBASIC26.78■■□□□ 1.88
CSB-PGBD3P0DP91 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
CSB-PGBD3P0DP91 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CSB-PGBD3P0DP91 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CSB-PGBD3P0DP91 AC113347.1-201ENST00000413321 391 ntBASIC26.78■■□□□ 1.88
CSB-PGBD3P0DP91 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CSB-PGBD3P0DP91 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
CSB-PGBD3P0DP91 NAPSB-206ENST00000562112 1266 ntBASIC26.78■■□□□ 1.88
CSB-PGBD3P0DP91 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
CSB-PGBD3P0DP91 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CSB-PGBD3P0DP91 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC26.78■■□□□ 1.88
CSB-PGBD3P0DP91 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CSB-PGBD3P0DP91 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
CSB-PGBD3P0DP91 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC26.77■■□□□ 1.88
CSB-PGBD3P0DP91 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC26.77■■□□□ 1.88
CSB-PGBD3P0DP91 PARN-205ENST00000539279 1557 ntTSL 2 BASIC26.77■■□□□ 1.88
CSB-PGBD3P0DP91 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CSB-PGBD3P0DP91 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC26.77■■□□□ 1.88
CSB-PGBD3P0DP91 DUT-205ENST00000558813 769 ntTSL 2 BASIC26.77■■□□□ 1.88
CSB-PGBD3P0DP91 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC26.77■■□□□ 1.88
CSB-PGBD3P0DP91 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CSB-PGBD3P0DP91 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CSB-PGBD3P0DP91 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC26.76■■□□□ 1.88
CSB-PGBD3P0DP91 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC26.76■■□□□ 1.87
CSB-PGBD3P0DP91 CYP2D8P-201ENST00000433633 1490 ntBASIC26.76■■□□□ 1.87
CSB-PGBD3P0DP91 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
CSB-PGBD3P0DP91 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC26.76■■□□□ 1.87
CSB-PGBD3P0DP91 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
CSB-PGBD3P0DP91 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC26.76■■□□□ 1.87
CSB-PGBD3P0DP91 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC26.76■■□□□ 1.87
CSB-PGBD3P0DP91 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC26.76■■□□□ 1.87
CSB-PGBD3P0DP91 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC26.76■■□□□ 1.87
CSB-PGBD3P0DP91 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC26.76■■□□□ 1.87
CSB-PGBD3P0DP91 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
CSB-PGBD3P0DP91 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
CSB-PGBD3P0DP91 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
CSB-PGBD3P0DP91 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
CSB-PGBD3P0DP91 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
CSB-PGBD3P0DP91 TUB-203ENST00000534099 1759 ntTSL 2 BASIC26.76■■□□□ 1.87
CSB-PGBD3P0DP91 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC26.76■■□□□ 1.87
CSB-PGBD3P0DP91 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC26.76■■□□□ 1.87
CSB-PGBD3P0DP91 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
CSB-PGBD3P0DP91 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC26.75■■□□□ 1.87
CSB-PGBD3P0DP91 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC26.75■■□□□ 1.87
CSB-PGBD3P0DP91 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
CSB-PGBD3P0DP91 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC26.75■■□□□ 1.87
CSB-PGBD3P0DP91 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC26.75■■□□□ 1.87
CSB-PGBD3P0DP91 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
CSB-PGBD3P0DP91 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC26.75■■□□□ 1.87
CSB-PGBD3P0DP91 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC26.75■■□□□ 1.87
CSB-PGBD3P0DP91 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC26.75■■□□□ 1.87
CSB-PGBD3P0DP91 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC26.75■■□□□ 1.87
CSB-PGBD3P0DP91 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC26.74■■□□□ 1.87
CSB-PGBD3P0DP91 AL137013.1-201ENST00000432946 1228 ntBASIC26.74■■□□□ 1.87
CSB-PGBD3P0DP91 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC26.74■■□□□ 1.87
CSB-PGBD3P0DP91 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC26.74■■□□□ 1.87
CSB-PGBD3P0DP91 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
CSB-PGBD3P0DP91 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
CSB-PGBD3P0DP91 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CSB-PGBD3P0DP91 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
CSB-PGBD3P0DP91 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CSB-PGBD3P0DP91 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
CSB-PGBD3P0DP91 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CSB-PGBD3P0DP91 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CSB-PGBD3P0DP91 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CSB-PGBD3P0DP91 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
CSB-PGBD3P0DP91 HLA-G-202ENST00000376815 851 ntBASIC26.73■■□□□ 1.87
CSB-PGBD3P0DP91 HLA-G-203ENST00000376818 1127 ntBASIC26.73■■□□□ 1.87
CSB-PGBD3P0DP91 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC26.73■■□□□ 1.87
CSB-PGBD3P0DP91 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC26.73■■□□□ 1.87
CSB-PGBD3P0DP91 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC26.73■■□□□ 1.87
CSB-PGBD3P0DP91 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC26.73■■□□□ 1.87
CSB-PGBD3P0DP91 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC26.73■■□□□ 1.87
CSB-PGBD3P0DP91 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC26.73■■□□□ 1.87
CSB-PGBD3P0DP91 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
CSB-PGBD3P0DP91 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC26.73■■□□□ 1.87
CSB-PGBD3P0DP91 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
CSB-PGBD3P0DP91 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC26.72■■□□□ 1.87
CSB-PGBD3P0DP91 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC26.72■■□□□ 1.87
CSB-PGBD3P0DP91 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC26.72■■□□□ 1.87
CSB-PGBD3P0DP91 KRT18P22-201ENST00000402024 1347 ntBASIC26.72■■□□□ 1.87
CSB-PGBD3P0DP91 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC26.72■■□□□ 1.87
CSB-PGBD3P0DP91 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC26.72■■□□□ 1.87
CSB-PGBD3P0DP91 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC26.72■■□□□ 1.87
CSB-PGBD3P0DP91 RNF146-204ENST00000476956 884 ntTSL 2 BASIC26.72■■□□□ 1.87
CSB-PGBD3P0DP91 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC26.72■■□□□ 1.87
CSB-PGBD3P0DP91 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC26.72■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms