Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LDLRP01130 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDLRP01130 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.37■□□□□ 0.69
LDLRP01130 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
LDLRP01130 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.37■□□□□ 0.69
LDLRP01130 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.37■□□□□ 0.69
LDLRP01130 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.37■□□□□ 0.69
LDLRP01130 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDLRP01130 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
LDLRP01130 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDLRP01130 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDLRP01130 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
LDLRP01130 FP700111.2-201ENST00000619190 1892 ntBASIC19.37■□□□□ 0.69
LDLRP01130 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.37■□□□□ 0.69
LDLRP01130 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDLRP01130 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
LDLRP01130 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
LDLRP01130 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LDLRP01130 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LDLRP01130 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LDLRP01130 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LDLRP01130 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LDLRP01130 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.36■□□□□ 0.69
LDLRP01130 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.36■□□□□ 0.69
LDLRP01130 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LDLRP01130 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LDLRP01130 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LDLRP01130 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.36■□□□□ 0.69
LDLRP01130 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.36■□□□□ 0.69
LDLRP01130 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.36■□□□□ 0.69
LDLRP01130 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
LDLRP01130 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
LDLRP01130 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
LDLRP01130 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LDLRP01130 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LDLRP01130 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.35■□□□□ 0.69
LDLRP01130 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LDLRP01130 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LDLRP01130 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LDLRP01130 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.35■□□□□ 0.69
LDLRP01130 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LDLRP01130 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.35■□□□□ 0.69
LDLRP01130 AC104187.1-201ENST00000607510 612 ntBASIC19.35■□□□□ 0.69
LDLRP01130 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LDLRP01130 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LDLRP01130 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LDLRP01130 AL020996.1-203ENST00000536896 2307 ntBASIC19.35■□□□□ 0.69
LDLRP01130 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LDLRP01130 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LDLRP01130 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LDLRP01130 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
LDLRP01130 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
LDLRP01130 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LDLRP01130 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LDLRP01130 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.34■□□□□ 0.69
LDLRP01130 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LDLRP01130 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
LDLRP01130 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LDLRP01130 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
LDLRP01130 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.34■□□□□ 0.69
LDLRP01130 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.34■□□□□ 0.69
LDLRP01130 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LDLRP01130 KRT18P29-201ENST00000397031 1267 ntBASIC19.34■□□□□ 0.69
LDLRP01130 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.34■□□□□ 0.69
LDLRP01130 AF201337.1-201ENST00000520239 748 ntBASIC19.34■□□□□ 0.69
LDLRP01130 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.34■□□□□ 0.69
LDLRP01130 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.34■□□□□ 0.69
LDLRP01130 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.34■□□□□ 0.69
LDLRP01130 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LDLRP01130 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.34■□□□□ 0.69
LDLRP01130 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
LDLRP01130 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LDLRP01130 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LDLRP01130 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LDLRP01130 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LDLRP01130 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
LDLRP01130 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.34■□□□□ 0.69
LDLRP01130 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LDLRP01130 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LDLRP01130 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LDLRP01130 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LDLRP01130 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LDLRP01130 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
LDLRP01130 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
LDLRP01130 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.33■□□□□ 0.68
LDLRP01130 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.33■□□□□ 0.68
LDLRP01130 UBE2DNL-204ENST00000602536 740 ntBASIC19.33■□□□□ 0.68
LDLRP01130 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.33■□□□□ 0.68
LDLRP01130 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
LDLRP01130 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
LDLRP01130 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LDLRP01130 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.32■□□□□ 0.68
LDLRP01130 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.32■□□□□ 0.68
LDLRP01130 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LDLRP01130 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LDLRP01130 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.32■□□□□ 0.68
LDLRP01130 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.32■□□□□ 0.68
LDLRP01130 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.32■□□□□ 0.68
LDLRP01130 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LDLRP01130 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms