Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC23.41■■□□□ 1.34
CDKL5O76039 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC23.41■■□□□ 1.34
CDKL5O76039 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CDKL5O76039 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC23.41■■□□□ 1.34
CDKL5O76039 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC23.41■■□□□ 1.34
CDKL5O76039 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CDKL5O76039 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC23.41■■□□□ 1.34
CDKL5O76039 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC23.41■■□□□ 1.34
CDKL5O76039 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CDKL5O76039 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC23.4■■□□□ 1.34
CDKL5O76039 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CDKL5O76039 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC23.4■■□□□ 1.34
CDKL5O76039 C2orf69P4-201ENST00000565394 541 ntBASIC23.4■■□□□ 1.34
CDKL5O76039 AL121832.2-201ENST00000610979 668 ntBASIC23.4■■□□□ 1.34
CDKL5O76039 AC092666.2-201ENST00000613287 246 ntBASIC23.4■■□□□ 1.34
CDKL5O76039 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC23.4■■□□□ 1.34
CDKL5O76039 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CDKL5O76039 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
CDKL5O76039 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CDKL5O76039 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CDKL5O76039 NXN-202ENST00000537628 1340 ntTSL 3 BASIC23.39■■□□□ 1.34
CDKL5O76039 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
CDKL5O76039 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
CDKL5O76039 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC23.39■■□□□ 1.34
CDKL5O76039 AL391422.3-201ENST00000603791 2761 ntBASIC23.39■■□□□ 1.34
CDKL5O76039 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CDKL5O76039 PHB2-213ENST00000546111 858 ntTSL 2 BASIC23.39■■□□□ 1.33
CDKL5O76039 MARS-234ENST00000630571 216 ntTSL 5 BASIC23.39■■□□□ 1.33
CDKL5O76039 MARS-235ENST00000630803 183 ntTSL 3 BASIC23.39■■□□□ 1.33
CDKL5O76039 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC23.39■■□□□ 1.33
CDKL5O76039 PTBP1P-201ENST00000554374 1601 ntBASIC23.39■■□□□ 1.33
CDKL5O76039 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.33
CDKL5O76039 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CDKL5O76039 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
CDKL5O76039 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CDKL5O76039 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CDKL5O76039 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CDKL5O76039 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC23.39■■□□□ 1.33
CDKL5O76039 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC23.39■■□□□ 1.33
CDKL5O76039 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC23.38■■□□□ 1.33
CDKL5O76039 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CDKL5O76039 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC23.38■■□□□ 1.33
CDKL5O76039 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC23.38■■□□□ 1.33
CDKL5O76039 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
CDKL5O76039 METTL15-202ENST00000403099 795 ntTSL 5 BASIC23.38■■□□□ 1.33
CDKL5O76039 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC23.38■■□□□ 1.33
CDKL5O76039 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC23.38■■□□□ 1.33
CDKL5O76039 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC23.38■■□□□ 1.33
CDKL5O76039 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC23.38■■□□□ 1.33
CDKL5O76039 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC23.38■■□□□ 1.33
CDKL5O76039 BX119927.1-201ENST00000636596 1552 ntBASIC23.38■■□□□ 1.33
CDKL5O76039 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
CDKL5O76039 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CDKL5O76039 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC23.38■■□□□ 1.33
CDKL5O76039 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CDKL5O76039 ADM-207ENST00000530439 1839 ntTSL 2 BASIC23.38■■□□□ 1.33
CDKL5O76039 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC23.38■■□□□ 1.33
CDKL5O76039 TCF3P1-201ENST00000423021 1937 ntBASIC23.37■■□□□ 1.33
CDKL5O76039 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC23.37■■□□□ 1.33
CDKL5O76039 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC23.37■■□□□ 1.33
CDKL5O76039 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CDKL5O76039 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CDKL5O76039 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
CDKL5O76039 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CDKL5O76039 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC23.37■■□□□ 1.33
CDKL5O76039 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC23.37■■□□□ 1.33
CDKL5O76039 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC23.37■■□□□ 1.33
CDKL5O76039 BX276092.2-201ENST00000417668 665 ntBASIC23.37■■□□□ 1.33
CDKL5O76039 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC23.37■■□□□ 1.33
CDKL5O76039 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC23.37■■□□□ 1.33
CDKL5O76039 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC23.37■■□□□ 1.33
CDKL5O76039 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CDKL5O76039 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
CDKL5O76039 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC23.37■■□□□ 1.33
CDKL5O76039 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CDKL5O76039 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CDKL5O76039 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
CDKL5O76039 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC23.36■■□□□ 1.33
CDKL5O76039 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CDKL5O76039 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CDKL5O76039 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CDKL5O76039 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CDKL5O76039 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CDKL5O76039 CD37-204ENST00000535669 1674 ntTSL 2 BASIC23.36■■□□□ 1.33
CDKL5O76039 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC23.36■■□□□ 1.33
CDKL5O76039 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CDKL5O76039 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC23.36■■□□□ 1.33
CDKL5O76039 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC23.36■■□□□ 1.33
CDKL5O76039 PPP1R14BP3-201ENST00000509033 445 ntBASIC23.36■■□□□ 1.33
CDKL5O76039 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
CDKL5O76039 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
CDKL5O76039 AC112907.3-201ENST00000577781 2400 ntBASIC23.35■■□□□ 1.33
CDKL5O76039 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CDKL5O76039 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC23.35■■□□□ 1.33
CDKL5O76039 KRT8P17-201ENST00000453110 1448 ntBASIC23.35■■□□□ 1.33
CDKL5O76039 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC23.35■■□□□ 1.33
CDKL5O76039 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CDKL5O76039 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CDKL5O76039 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC23.35■■□□□ 1.33
CDKL5O76039 AC083906.2-201ENST00000511578 360 ntBASIC23.35■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms