Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM38O00635 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM38O00635 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM38O00635 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM38O00635 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM38O00635 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM38O00635 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM38O00635 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM38O00635 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM38O00635 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM38O00635 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM38O00635 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
TRIM38O00635 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM38O00635 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
TRIM38O00635 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.19■□□□□ 0.82
TRIM38O00635 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.19■□□□□ 0.82
TRIM38O00635 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.19■□□□□ 0.82
TRIM38O00635 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.19■□□□□ 0.82
TRIM38O00635 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
TRIM38O00635 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM38O00635 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM38O00635 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM38O00635 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
TRIM38O00635 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
TRIM38O00635 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM38O00635 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM38O00635 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM38O00635 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM38O00635 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM38O00635 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM38O00635 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.18■□□□□ 0.82
TRIM38O00635 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM38O00635 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM38O00635 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM38O00635 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM38O00635 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.18■□□□□ 0.82
TRIM38O00635 AP005212.1-201ENST00000581547 1997 ntBASIC20.18■□□□□ 0.82
TRIM38O00635 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM38O00635 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM38O00635 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM38O00635 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.18■□□□□ 0.82
TRIM38O00635 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.18■□□□□ 0.82
TRIM38O00635 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.18■□□□□ 0.82
TRIM38O00635 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM38O00635 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM38O00635 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM38O00635 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
TRIM38O00635 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.18■□□□□ 0.82
TRIM38O00635 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.18■□□□□ 0.82
TRIM38O00635 AL359736.2-201ENST00000621992 437 ntBASIC20.18■□□□□ 0.82
TRIM38O00635 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
TRIM38O00635 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM38O00635 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.18■□□□□ 0.82
TRIM38O00635 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.18■□□□□ 0.82
TRIM38O00635 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM38O00635 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
TRIM38O00635 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.18■□□□□ 0.82
TRIM38O00635 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
TRIM38O00635 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.17■□□□□ 0.82
TRIM38O00635 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.17■□□□□ 0.82
TRIM38O00635 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM38O00635 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM38O00635 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM38O00635 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.17■□□□□ 0.82
TRIM38O00635 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.17■□□□□ 0.82
TRIM38O00635 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.17■□□□□ 0.82
TRIM38O00635 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.17■□□□□ 0.82
TRIM38O00635 AC007322.3-201ENST00000426526 701 ntBASIC20.17■□□□□ 0.82
TRIM38O00635 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.17■□□□□ 0.82
TRIM38O00635 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM38O00635 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.17■□□□□ 0.82
TRIM38O00635 PNMA6B-201ENST00000538162 1200 ntBASIC20.17■□□□□ 0.82
TRIM38O00635 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.17■□□□□ 0.82
TRIM38O00635 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM38O00635 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
TRIM38O00635 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
TRIM38O00635 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.17■□□□□ 0.82
TRIM38O00635 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.17■□□□□ 0.82
TRIM38O00635 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.17■□□□□ 0.82
TRIM38O00635 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM38O00635 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
TRIM38O00635 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.16■□□□□ 0.82
TRIM38O00635 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM38O00635 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM38O00635 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.16■□□□□ 0.82
TRIM38O00635 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.16■□□□□ 0.82
TRIM38O00635 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM38O00635 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.16■□□□□ 0.82
TRIM38O00635 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM38O00635 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM38O00635 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM38O00635 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM38O00635 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
TRIM38O00635 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM38O00635 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.16■□□□□ 0.82
TRIM38O00635 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.16■□□□□ 0.82
TRIM38O00635 AC008550.1-201ENST00000511500 884 ntBASIC20.16■□□□□ 0.82
TRIM38O00635 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.16■□□□□ 0.82
TRIM38O00635 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM38O00635 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms