Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 AC120498.8-201ENST00000614275 531 ntBASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 AL023875.1-201ENST00000640777 796 ntBASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
TRAV40A0A0B4J280 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAV40A0A0B4J280 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC16.41■□□□□ 0.22
TRAV40A0A0B4J280 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC16.41■□□□□ 0.22
TRAV40A0A0B4J280 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
TRAV40A0A0B4J280 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAV40A0A0B4J280 ISG20-202ENST00000379224 540 ntTSL 3 BASIC16.41■□□□□ 0.22
TRAV40A0A0B4J280 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC16.41■□□□□ 0.22
TRAV40A0A0B4J280 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRAV40A0A0B4J280 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC16.41■□□□□ 0.22
TRAV40A0A0B4J280 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC16.41■□□□□ 0.22
TRAV40A0A0B4J280 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC16.41■□□□□ 0.22
TRAV40A0A0B4J280 MTDHP1-201ENST00000605323 784 ntBASIC16.41■□□□□ 0.22
TRAV40A0A0B4J280 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRAV40A0A0B4J280 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRAV40A0A0B4J280 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
TRAV40A0A0B4J280 WWC2-AS2-201ENST00000578387 2183 ntBASIC16.41■□□□□ 0.22
TRAV40A0A0B4J280 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
TRAV40A0A0B4J280 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
TRAV40A0A0B4J280 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRAV40A0A0B4J280 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 AL596275.1-201ENST00000423464 877 ntBASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 LY6E-205ENST00000519611 635 ntTSL 3 BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRAV40A0A0B4J280 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC16.39■□□□□ 0.22
TRAV40A0A0B4J280 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.22
TRAV40A0A0B4J280 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRAV40A0A0B4J280 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRAV40A0A0B4J280 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.21
TRAV40A0A0B4J280 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRAV40A0A0B4J280 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC16.39■□□□□ 0.21
TRAV40A0A0B4J280 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRAV40A0A0B4J280 PLK5-205ENST00000642079 1969 ntBASIC16.39■□□□□ 0.21
TRAV40A0A0B4J280 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC16.39■□□□□ 0.21
TRAV40A0A0B4J280 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC16.39■□□□□ 0.21
TRAV40A0A0B4J280 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC16.39■□□□□ 0.21
TRAV40A0A0B4J280 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC16.39■□□□□ 0.21
TRAV40A0A0B4J280 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms