Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC007671.1-201ENST00000616957 830 ntBASIC8.38□□□□□ -1.07
MSX1P28360 AC104985.2-201ENST00000620598 500 ntBASIC8.38□□□□□ -1.07
MSX1P28360 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC8.38□□□□□ -1.07
MSX1P28360 EAF1-AS1-212ENST00000626521 561 ntTSL 5 BASIC8.38□□□□□ -1.07
MSX1P28360 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC8.38□□□□□ -1.07
MSX1P28360 OR2B11-203ENST00000641527 4545 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
MSX1P28360 XRCC2-201ENST00000359321 3067 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 CTNND1-202ENST00000361332 6295 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 RFT1-201ENST00000296292 5108 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 NCAPG2-203ENST00000409423 3957 ntAPPRIS P1 TSL 2 BASIC8.38□□□□□ -1.07
MSX1P28360 FAM193A-210ENST00000545951 3987 ntAPPRIS ALT2 TSL 5 BASIC8.38□□□□□ -1.07
MSX1P28360 HACL1-208ENST00000456194 1880 ntTSL 2 BASIC8.38□□□□□ -1.07
MSX1P28360 AC017002.4-201ENST00000604721 1525 ntBASIC8.38□□□□□ -1.07
MSX1P28360 PTPN20-201ENST00000374218 2872 ntAPPRIS ALT2 TSL 5 BASIC8.38□□□□□ -1.07
MSX1P28360 ADGRG1-202ENST00000456916 3860 ntTSL 2 BASIC8.38□□□□□ -1.07
MSX1P28360 TARS-202ENST00000455217 2523 ntTSL 2 BASIC8.38□□□□□ -1.07
MSX1P28360 CAPN3-201ENST00000318023 3172 ntTSL 5 BASIC8.38□□□□□ -1.07
MSX1P28360 TRERF1-201ENST00000340840 4174 ntTSL 5 BASIC8.38□□□□□ -1.07
MSX1P28360 SYNE1-206ENST00000367253 5189 ntTSL 5 BASIC8.38□□□□□ -1.07
MSX1P28360 CYP2C9-201ENST00000260682 1847 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 TUBB1-201ENST00000217133 3496 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 EXOSC9-201ENST00000243498 1481 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
MSX1P28360 UNC5D-205ENST00000449677 2448 ntTSL 2 BASIC8.38□□□□□ -1.07
MSX1P28360 LINC01258-201ENST00000512517 2059 ntTSL 2 BASIC8.38□□□□□ -1.07
MSX1P28360 COL24A1-201ENST00000370571 6825 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 SYNE3-205ENST00000557275 13488 ntAPPRIS ALT1 TSL 2 BASIC8.37□□□□□ -1.07
MSX1P28360 NOSTRIN-202ENST00000397206 1446 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 UBE3B-207ENST00000537063 3600 ntTSL 3 BASIC8.37□□□□□ -1.07
MSX1P28360 DMP1-202ENST00000339673 2682 ntAPPRIS P3 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 TTLL7-IT1-201ENST00000455929 2921 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 DCAF1-203ENST00000504652 5951 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC8.37□□□□□ -1.07
MSX1P28360 POLR3B-202ENST00000539066 4118 ntTSL 2 BASIC8.37□□□□□ -1.07
MSX1P28360 MROH3P-202ENST00000635940 2556 ntTSL 5 BASIC8.37□□□□□ -1.07
MSX1P28360 GABRR1-207ENST00000621627 2857 ntTSL 5 BASIC8.37□□□□□ -1.07
MSX1P28360 KCNE1-206ENST00000432085 3184 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 ZSCAN30-201ENST00000333206 4097 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 CAND1-208ENST00000545606 11251 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 ANO2-211ENST00000546188 3702 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 EFHC1-213ENST00000635996 2548 ntTSL 5 BASIC8.37□□□□□ -1.07
MSX1P28360 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 DPF3-216ENST00000614862 4221 ntTSL 5 BASIC8.37□□□□□ -1.07
MSX1P28360 STAG3-219ENST00000620100 4203 ntAPPRIS ALT2 TSL 5 BASIC8.37□□□□□ -1.07
MSX1P28360 AC011893.1-201ENST00000437007 1862 ntTSL 2 BASIC8.37□□□□□ -1.07
MSX1P28360 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC8.37□□□□□ -1.07
MSX1P28360 MGAM2-203ENST00000550469 1591 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
MSX1P28360 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 AL109615.1-201ENST00000331979 455 ntBASIC8.37□□□□□ -1.07
MSX1P28360 IGFL3-201ENST00000341415 662 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 RNU5B-1-201ENST00000363286 116 ntBASIC8.37□□□□□ -1.07
MSX1P28360 MIR25-201ENST00000384816 84 ntBASIC8.37□□□□□ -1.07
MSX1P28360 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 MICU1-203ENST00000398763 1224 ntTSL 2 BASIC8.37□□□□□ -1.07
MSX1P28360 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 RPL36A-HNRNPH2-201ENST00000409170 562 ntAPPRIS P1 TSL 4 BASIC8.37□□□□□ -1.07
MSX1P28360 AL445183.3-201ENST00000414168 502 ntBASIC8.37□□□□□ -1.07
MSX1P28360 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC8.37□□□□□ -1.07
MSX1P28360 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC8.37□□□□□ -1.07
MSX1P28360 NAP1L4P2-201ENST00000425958 899 ntBASIC8.37□□□□□ -1.07
MSX1P28360 WT1-AS_7.1-201ENST00000426618 294 ntBASIC8.37□□□□□ -1.07
MSX1P28360 MTND3P23-201ENST00000431980 347 ntBASIC8.37□□□□□ -1.07
MSX1P28360 AL596276.1-201ENST00000434465 418 ntBASIC8.37□□□□□ -1.07
MSX1P28360 NANOGP2-201ENST00000435391 727 ntBASIC8.37□□□□□ -1.07
MSX1P28360 ARL5AP3-201ENST00000439327 386 ntBASIC8.37□□□□□ -1.07
MSX1P28360 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC8.37□□□□□ -1.07
MSX1P28360 AC009263.1-201ENST00000441193 1239 ntBASIC8.37□□□□□ -1.07
MSX1P28360 AC011193.1-202ENST00000441287 323 ntTSL 3 BASIC8.37□□□□□ -1.07
MSX1P28360 LINC01961-201ENST00000449954 745 ntTSL 5 BASIC8.37□□□□□ -1.07
MSX1P28360 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC8.37□□□□□ -1.07
MSX1P28360 TMEM97P1-201ENST00000452969 451 ntBASIC8.37□□□□□ -1.07
MSX1P28360 AL663058.1-201ENST00000453379 353 ntBASIC8.37□□□□□ -1.07
MSX1P28360 RPL29P25-201ENST00000465069 850 ntBASIC8.37□□□□□ -1.07
MSX1P28360 PTPRE-207ENST00000471218 522 ntTSL 3 BASIC8.37□□□□□ -1.07
MSX1P28360 RPL9P33-201ENST00000484311 566 ntBASIC8.37□□□□□ -1.07
MSX1P28360 AC092807.3-202ENST00000498304 508 ntTSL 3 BASIC8.37□□□□□ -1.07
MSX1P28360 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC8.37□□□□□ -1.07
MSX1P28360 CDC42P4-201ENST00000510507 563 ntBASIC8.37□□□□□ -1.07
MSX1P28360 Y_RNA.695-201ENST00000516715 107 ntBASIC8.37□□□□□ -1.07
MSX1P28360 SEC11B-201ENST00000518383 499 ntBASIC8.37□□□□□ -1.07
MSX1P28360 ACTBP6-201ENST00000520036 1090 ntBASIC8.37□□□□□ -1.07
MSX1P28360 AC091946.1-201ENST00000522350 852 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 AC084128.1-201ENST00000523112 501 ntTSL 3 BASIC8.37□□□□□ -1.07
MSX1P28360 ZNF195-220ENST00000528796 881 ntTSL 5 BASIC8.37□□□□□ -1.07
MSX1P28360 AL121766.1-201ENST00000547436 487 ntBASIC8.37□□□□□ -1.07
MSX1P28360 ELOCP32-201ENST00000548625 324 ntBASIC8.37□□□□□ -1.07
MSX1P28360 PLCB2-AS1-201ENST00000559520 568 ntTSL 3 BASIC8.37□□□□□ -1.07
MSX1P28360 AC025280.1-201ENST00000562393 260 ntTSL 2 BASIC8.37□□□□□ -1.07
MSX1P28360 TMX3-204ENST00000562706 937 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.07
MSX1P28360 ZNF771-203ENST00000564550 1187 ntTSL 5 BASIC8.37□□□□□ -1.07
MSX1P28360 AC126335.1-201ENST00000568414 510 ntTSL 2 BASIC8.37□□□□□ -1.07
MSX1P28360 MIR3650-201ENST00000581972 60 ntBASIC8.37□□□□□ -1.07
MSX1P28360 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC8.37□□□□□ -1.07
MSX1P28360 VN1R90P-201ENST00000595717 726 ntBASIC8.37□□□□□ -1.07
MSX1P28360 ZNF880-206ENST00000600321 953 ntTSL 2 BASIC8.37□□□□□ -1.07
MSX1P28360 AL020997.3-201ENST00000602843 359 ntBASIC8.37□□□□□ -1.07
MSX1P28360 RNU4-89P-201ENST00000607443 133 ntBASIC8.37□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms