Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AP005328.1-202ENST00000580781 776 ntTSL 3 BASIC8.4□□□□□ -1.06
MSX1P28360 AC087393.2-201ENST00000580962 504 ntTSL 3 BASIC8.4□□□□□ -1.06
MSX1P28360 RN7SL731P-201ENST00000584329 293 ntBASIC8.4□□□□□ -1.06
MSX1P28360 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC8.4□□□□□ -1.06
MSX1P28360 AC015802.2-201ENST00000589690 189 ntBASIC8.4□□□□□ -1.06
MSX1P28360 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC8.4□□□□□ -1.06
MSX1P28360 AC100767.2-201ENST00000604840 693 ntBASIC8.4□□□□□ -1.06
MSX1P28360 AL662797.2-201ENST00000607333 527 ntTSL 2 BASIC8.4□□□□□ -1.06
MSX1P28360 AC008875.1-201ENST00000607715 811 ntBASIC8.4□□□□□ -1.06
MSX1P28360 EIF3H-212ENST00000611080 1265 ntTSL 5 BASIC8.4□□□□□ -1.06
MSX1P28360 FRG1HP-203ENST00000615326 593 ntTSL 3 BASIC8.4□□□□□ -1.06
MSX1P28360 HOXA11-AS1_2.1-201ENST00000615604 187 ntBASIC8.4□□□□□ -1.06
MSX1P28360 FRG1HP-204ENST00000617940 757 ntBASIC8.4□□□□□ -1.06
MSX1P28360 HIST1H2BM-201ENST00000621112 381 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
MSX1P28360 AC090617.9-201ENST00000623751 147 ntBASIC8.4□□□□□ -1.06
MSX1P28360 LAMTOR5-AS1-236ENST00000626261 464 ntTSL 5 BASIC8.4□□□□□ -1.06
MSX1P28360 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC8.4□□□□□ -1.06
MSX1P28360 AL356481.2-201ENST00000629902 528 ntTSL 3 BASIC8.4□□□□□ -1.06
MSX1P28360 TNNT3-218ENST00000641787 924 ntAPPRIS ALT2 BASIC8.4□□□□□ -1.06
MSX1P28360 HDAC9-229ENST00000622668 4279 ntTSL 2 BASIC8.4□□□□□ -1.06
MSX1P28360 LINC02210-213ENST00000591271 9678 ntTSL 3 BASIC8.4□□□□□ -1.06
MSX1P28360 MYOM2-212ENST00000523438 3328 ntTSL 2 BASIC8.4□□□□□ -1.07
MSX1P28360 IL5RA-203ENST00000383846 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC8.4□□□□□ -1.07
MSX1P28360 CEP192-202ENST00000430049 3286 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
MSX1P28360 BDNF-216ENST00000532997 3930 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
MSX1P28360 HIP1-201ENST00000336926 8013 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
MSX1P28360 CASC15-203ENST00000605917 4461 ntBASIC8.4□□□□□ -1.07
MSX1P28360 GON4L-217ENST00000615926 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC8.4□□□□□ -1.07
MSX1P28360 PREPL-202ENST00000378511 2315 ntTSL 1 (best) BASIC8.4□□□□□ -1.07
MSX1P28360 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC8.4□□□□□ -1.07
MSX1P28360 ZNF189-204ENST00000615466 2316 ntTSL 3 BASIC8.4□□□□□ -1.07
MSX1P28360 FTSJ3-201ENST00000427159 3559 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
MSX1P28360 FMO8P-201ENST00000434461 1600 ntBASIC8.4□□□□□ -1.07
MSX1P28360 GJB2-202ENST00000382848 2250 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
MSX1P28360 SLC7A7-215ENST00000555702 2272 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
MSX1P28360 DIO2-AS1-201ENST00000553979 1597 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
MSX1P28360 FAM171A1-201ENST00000378116 3952 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
MSX1P28360 TRIM53AP-201ENST00000532014 1544 ntBASIC8.39□□□□□ -1.07
MSX1P28360 IQCH-AS1-203ENST00000559298 5753 ntTSL 5 BASIC8.39□□□□□ -1.07
MSX1P28360 HMGB1-203ENST00000341423 5485 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
MSX1P28360 EEF1A1P33-201ENST00000554413 1362 ntBASIC8.39□□□□□ -1.07
MSX1P28360 AC023790.2-201ENST00000543321 2403 ntTSL 5 BASIC8.39□□□□□ -1.07
MSX1P28360 AL392183.1-201ENST00000606622 2436 ntTSL 4 BASIC8.39□□□□□ -1.07
MSX1P28360 RBMS3-203ENST00000383767 1864 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
MSX1P28360 ANKRD20A17P-201ENST00000511745 1330 ntBASIC8.39□□□□□ -1.07
MSX1P28360 BRCA1-219ENST00000491747 2379 ntTSL 5 BASIC8.39□□□□□ -1.07
MSX1P28360 TCF4-208ENST00000543082 2399 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
MSX1P28360 GFM2-202ENST00000345239 2856 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
MSX1P28360 HCRTR2-201ENST00000370862 1837 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
MSX1P28360 GABRA1-219ENST00000638112 2818 ntAPPRIS P1 TSL 5 BASIC8.39□□□□□ -1.07
MSX1P28360 LCN1-201ENST00000263598 776 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
MSX1P28360 UBXN8-202ENST00000341403 1202 ntTSL 3 BASIC8.39□□□□□ -1.07
MSX1P28360 MUC1-205ENST00000368389 543 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
MSX1P28360 MOSPD1-202ENST00000370779 773 ntTSL 2 BASIC8.39□□□□□ -1.07
MSX1P28360 MITF-205ENST00000394348 1069 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
MSX1P28360 ATP5F1P3-201ENST00000397213 657 ntBASIC8.39□□□□□ -1.07
MSX1P28360 RHBDD1-203ENST00000409053 538 ntTSL 4 BASIC8.39□□□□□ -1.07
MSX1P28360 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC8.39□□□□□ -1.07
MSX1P28360 ACTG1P1-201ENST00000415794 1129 ntBASIC8.39□□□□□ -1.07
MSX1P28360 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC8.39□□□□□ -1.07
MSX1P28360 EIF1P1-201ENST00000421436 341 ntBASIC8.39□□□□□ -1.07
MSX1P28360 ELOA-AS1-201ENST00000427796 1074 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
MSX1P28360 OR13D2P-201ENST00000430667 907 ntBASIC8.39□□□□□ -1.07
MSX1P28360 AC011998.2-201ENST00000430884 473 ntBASIC8.39□□□□□ -1.07
MSX1P28360 LINC01655-201ENST00000431729 423 ntTSL 3 BASIC8.39□□□□□ -1.07
MSX1P28360 AL022313.3-201ENST00000433970 405 ntTSL 2 BASIC8.39□□□□□ -1.07
MSX1P28360 PRKAR1AP1-201ENST00000441422 1162 ntBASIC8.39□□□□□ -1.07
MSX1P28360 AL133387.1-201ENST00000442188 382 ntTSL 3 BASIC8.39□□□□□ -1.07
MSX1P28360 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC8.39□□□□□ -1.07
MSX1P28360 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC8.39□□□□□ -1.07
MSX1P28360 AP000936.2-201ENST00000447151 681 ntBASIC8.39□□□□□ -1.07
MSX1P28360 AC092620.1-201ENST00000453636 680 ntTSL 3 BASIC8.39□□□□□ -1.07
MSX1P28360 AL445673.1-201ENST00000455124 416 ntTSL 3 BASIC8.39□□□□□ -1.07
MSX1P28360 STARD13-IT1-201ENST00000456087 452 ntTSL 5 BASIC8.39□□□□□ -1.07
MSX1P28360 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC8.39□□□□□ -1.07
MSX1P28360 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC8.39□□□□□ -1.07
MSX1P28360 AC016968.1-201ENST00000479610 697 ntTSL 3 BASIC8.39□□□□□ -1.07
MSX1P28360 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC8.39□□□□□ -1.07
MSX1P28360 AC068724.1-201ENST00000487100 792 ntBASIC8.39□□□□□ -1.07
MSX1P28360 CC2D2A-207ENST00000507954 548 ntAPPRIS ALT2 TSL 2 BASIC8.39□□□□□ -1.07
MSX1P28360 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC8.39□□□□□ -1.07
MSX1P28360 AC093281.2-201ENST00000510153 597 ntBASIC8.39□□□□□ -1.07
MSX1P28360 AC139713.1-202ENST00000512366 460 ntBASIC8.39□□□□□ -1.07
MSX1P28360 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC8.39□□□□□ -1.07
MSX1P28360 RNU6-528P-201ENST00000516926 100 ntBASIC8.39□□□□□ -1.07
MSX1P28360 AC023232.1-201ENST00000524963 285 ntBASIC8.39□□□□□ -1.07
MSX1P28360 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC8.39□□□□□ -1.07
MSX1P28360 AP000916.1-201ENST00000533869 835 ntBASIC8.39□□□□□ -1.07
MSX1P28360 PROSER3-207ENST00000537459 772 ntAPPRIS ALT2 TSL 1 (best) BASIC8.39□□□□□ -1.07
MSX1P28360 RASA4-217ENST00000538869 483 ntTSL 5 BASIC8.39□□□□□ -1.07
MSX1P28360 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC8.39□□□□□ -1.07
MSX1P28360 TRAPPC1-202ENST00000540486 759 ntAPPRIS P1 TSL 2 BASIC8.39□□□□□ -1.07
MSX1P28360 AC007406.2-201ENST00000540868 503 ntTSL 5 BASIC8.39□□□□□ -1.07
MSX1P28360 AC087863.1-201ENST00000544515 570 ntTSL 4 BASIC8.39□□□□□ -1.07
MSX1P28360 AC078865.1-201ENST00000547174 562 ntTSL 4 BASIC8.39□□□□□ -1.07
MSX1P28360 LINC02301-202ENST00000555150 428 ntTSL 3 BASIC8.39□□□□□ -1.07
MSX1P28360 PCSK6-AS1-201ENST00000558696 639 ntTSL 3 BASIC8.39□□□□□ -1.07
MSX1P28360 AC104229.1-201ENST00000561364 255 ntBASIC8.39□□□□□ -1.07
MSX1P28360 OR4C45-201ENST00000568934 921 ntAPPRIS P1 BASIC8.39□□□□□ -1.07
MSX1P28360 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC8.39□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms