Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 GTF2A1-203ENST00000553612 6306 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
MSX1P28360 PPP3CB-202ENST00000360663 3501 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
MSX1P28360 TRIM39-203ENST00000396547 3187 ntAPPRIS P4 TSL 1 (best) BASIC8.41□□□□□ -1.06
MSX1P28360 PRUNE1-204ENST00000368936 2788 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
MSX1P28360 KLF7-202ENST00000412414 7954 ntTSL 2 BASIC8.41□□□□□ -1.06
MSX1P28360 FGF1-204ENST00000378046 2582 ntAPPRIS P1 TSL 3 BASIC8.41□□□□□ -1.06
MSX1P28360 MEF2C-229ENST00000627659 2393 ntTSL 5 BASIC8.41□□□□□ -1.06
MSX1P28360 LARP1B-202ENST00000394288 2151 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
MSX1P28360 MIGA1-202ENST00000443751 6409 ntAPPRIS ALT2 TSL 1 (best) BASIC8.41□□□□□ -1.06
MSX1P28360 AC012409.5-201ENST00000624746 3424 ntBASIC8.41□□□□□ -1.06
MSX1P28360 RSL24D1-201ENST00000260443 2015 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
MSX1P28360 ADNP-204ENST00000396032 4581 ntAPPRIS P1 TSL 2 BASIC8.41□□□□□ -1.06
MSX1P28360 SYNE1-230ENST00000495090 1907 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
MSX1P28360 RNPC3-201ENST00000423855 1872 ntAPPRIS P2 TSL 1 (best) BASIC8.4□□□□□ -1.06
MSX1P28360 SOCS4-202ENST00000395472 6779 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
MSX1P28360 GTF3C2-202ENST00000359541 3992 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
MSX1P28360 RCAN1-207ENST00000481448 2816 ntTSL 5 BASIC8.4□□□□□ -1.06
MSX1P28360 AC092375.2-201ENST00000567370 1665 ntBASIC8.4□□□□□ -1.06
MSX1P28360 AC009021.2-201ENST00000567401 1666 ntBASIC8.4□□□□□ -1.06
MSX1P28360 DOCK8-205ENST00000453981 7237 ntTSL 5 BASIC8.4□□□□□ -1.06
MSX1P28360 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC8.4□□□□□ -1.06
MSX1P28360 BBS7-201ENST00000264499 3752 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
MSX1P28360 ERCC6-201ENST00000355832 8008 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
MSX1P28360 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
MSX1P28360 AC024600.1-201ENST00000425902 2572 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
MSX1P28360 KIF1B-211ENST00000620295 8624 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
MSX1P28360 ZNF780B-201ENST00000221355 3538 ntTSL 2 BASIC8.4□□□□□ -1.06
MSX1P28360 C4orf46-201ENST00000379205 3521 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
MSX1P28360 CU634019.3-201ENST00000623962 2456 ntBASIC8.4□□□□□ -1.06
MSX1P28360 FP236315.2-201ENST00000624506 2456 ntBASIC8.4□□□□□ -1.06
MSX1P28360 FP671120.2-201ENST00000624806 2456 ntBASIC8.4□□□□□ -1.06
MSX1P28360 TULP4-202ENST00000367097 11295 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
MSX1P28360 AL353625.1-201ENST00000569097 3131 ntBASIC8.4□□□□□ -1.06
MSX1P28360 BBS9-204ENST00000396127 3914 ntTSL 5 BASIC8.4□□□□□ -1.06
MSX1P28360 CLUL1-203ENST00000540035 2199 ntTSL 2 BASIC8.4□□□□□ -1.06
MSX1P28360 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
MSX1P28360 TTTY6-201ENST00000253838 491 ntTSL 2 BASIC8.4□□□□□ -1.06
MSX1P28360 TTTY6B-201ENST00000253848 491 ntTSL 3 BASIC8.4□□□□□ -1.06
MSX1P28360 TNFAIP8-201ENST00000274456 795 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
MSX1P28360 PPP1R3B-201ENST00000310455 5548 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
MSX1P28360 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
MSX1P28360 OR10T2-201ENST00000334438 945 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
MSX1P28360 TNNT3-202ENST00000344578 794 ntAPPRIS ALT2 TSL 5 BASIC8.4□□□□□ -1.06
MSX1P28360 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
MSX1P28360 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC8.4□□□□□ -1.06
MSX1P28360 RNA5SP349-201ENST00000363743 109 ntBASIC8.4□□□□□ -1.06
MSX1P28360 AL353625.1-202ENST00000366273 571 ntBASIC8.4□□□□□ -1.06
MSX1P28360 TNNT3-205ENST00000381563 844 ntAPPRIS ALT2 TSL 5 BASIC8.4□□□□□ -1.06
MSX1P28360 COX7B2-202ENST00000396533 617 ntAPPRIS P2 TSL 1 (best) BASIC8.4□□□□□ -1.06
MSX1P28360 TNNT3-209ENST00000397304 720 ntAPPRIS ALT2 TSL 5 BASIC8.4□□□□□ -1.06
MSX1P28360 AL031777.1-201ENST00000405418 499 ntBASIC8.4□□□□□ -1.06
MSX1P28360 MTND1P21-201ENST00000412991 285 ntBASIC8.4□□□□□ -1.06
MSX1P28360 SLC25A26-203ENST00000413054 1096 ntTSL 5 BASIC8.4□□□□□ -1.06
MSX1P28360 AC245884.5-201ENST00000417373 170 ntBASIC8.4□□□□□ -1.06
MSX1P28360 MTND4P3-201ENST00000417829 541 ntBASIC8.4□□□□□ -1.06
MSX1P28360 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC8.4□□□□□ -1.06
MSX1P28360 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
MSX1P28360 AL161638.2-201ENST00000427319 507 ntTSL 3 BASIC8.4□□□□□ -1.06
MSX1P28360 OR52J2P-201ENST00000427973 939 ntBASIC8.4□□□□□ -1.06
MSX1P28360 OFD1P13Y-201ENST00000431179 1232 ntBASIC8.4□□□□□ -1.06
MSX1P28360 Z99758.1-201ENST00000432081 368 ntTSL 3 BASIC8.4□□□□□ -1.06
MSX1P28360 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC8.4□□□□□ -1.06
MSX1P28360 CFAP58-AS1-201ENST00000435434 795 ntTSL 2 BASIC8.4□□□□□ -1.06
MSX1P28360 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC8.4□□□□□ -1.06
MSX1P28360 AL592114.3-201ENST00000437919 446 ntTSL 3 BASIC8.4□□□□□ -1.06
MSX1P28360 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC8.4□□□□□ -1.06
MSX1P28360 PPP1R2P2-201ENST00000440405 613 ntBASIC8.4□□□□□ -1.06
MSX1P28360 CRIP1P4-201ENST00000442565 229 ntBASIC8.4□□□□□ -1.06
MSX1P28360 TNNT3-210ENST00000446240 720 ntAPPRIS ALT2 TSL 5 BASIC8.4□□□□□ -1.06
MSX1P28360 OR52E3P-201ENST00000452083 936 ntBASIC8.4□□□□□ -1.06
MSX1P28360 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC8.4□□□□□ -1.06
MSX1P28360 CEACAMP11-201ENST00000455211 583 ntBASIC8.4□□□□□ -1.06
MSX1P28360 PCBP1-AS1-242ENST00000458686 1020 ntTSL 5 BASIC8.4□□□□□ -1.06
MSX1P28360 GAPDHP50-201ENST00000464421 993 ntBASIC8.4□□□□□ -1.06
MSX1P28360 AC130651.1-201ENST00000482912 598 ntBASIC8.4□□□□□ -1.06
MSX1P28360 AC011825.1-201ENST00000484967 388 ntBASIC8.4□□□□□ -1.06
MSX1P28360 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC8.4□□□□□ -1.06
MSX1P28360 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC8.4□□□□□ -1.06
MSX1P28360 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC8.4□□□□□ -1.06
MSX1P28360 AP000879.1-201ENST00000526174 976 ntTSL 5 BASIC8.4□□□□□ -1.06
MSX1P28360 RPS3-207ENST00000526608 710 ntTSL 5 BASIC8.4□□□□□ -1.06
MSX1P28360 MIR100HG-211ENST00000531071 970 ntTSL 3 BASIC8.4□□□□□ -1.06
MSX1P28360 AC103681.1-201ENST00000531663 423 ntTSL 3 BASIC8.4□□□□□ -1.06
MSX1P28360 PDCL2P2-201ENST00000533651 189 ntBASIC8.4□□□□□ -1.06
MSX1P28360 AC044839.4-201ENST00000534128 469 ntTSL 3 BASIC8.4□□□□□ -1.06
MSX1P28360 AC092851.1-201ENST00000535964 478 ntBASIC8.4□□□□□ -1.06
MSX1P28360 AC124891.1-201ENST00000536322 519 ntBASIC8.4□□□□□ -1.06
MSX1P28360 AP006296.1-201ENST00000537438 499 ntBASIC8.4□□□□□ -1.06
MSX1P28360 LINC02455-201ENST00000541881 496 ntTSL 3 BASIC8.4□□□□□ -1.06
MSX1P28360 PHBP19-201ENST00000547512 754 ntBASIC8.4□□□□□ -1.06
MSX1P28360 PCED1B-AS1-209ENST00000552269 673 ntTSL 2 BASIC8.4□□□□□ -1.06
MSX1P28360 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC8.4□□□□□ -1.06
MSX1P28360 LINC00520-202ENST00000554196 514 ntTSL 3 BASIC8.4□□□□□ -1.06
MSX1P28360 ASB9P1-201ENST00000557146 793 ntBASIC8.4□□□□□ -1.06
MSX1P28360 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC8.4□□□□□ -1.06
MSX1P28360 AC009075.1-201ENST00000563347 391 ntTSL 3 BASIC8.4□□□□□ -1.06
MSX1P28360 AC009101.1-201ENST00000568135 242 ntBASIC8.4□□□□□ -1.06
MSX1P28360 AC074051.3-201ENST00000570238 358 ntBASIC8.4□□□□□ -1.06
MSX1P28360 NDUFA3P6-201ENST00000571486 250 ntBASIC8.4□□□□□ -1.06
MSX1P28360 MIR3150B-201ENST00000580142 86 ntBASIC8.4□□□□□ -1.06
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms