Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 SLC25A24-204ENST00000569674 2357 ntBASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 LY6E-205ENST00000519611 635 ntTSL 3 BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
SSX2IPQ9Y2D8 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 AL135905.2-201ENST00000584934 1404 ntBASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 AC239809.2-201ENST00000415381 517 ntBASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.66■■□□□ 1.06
SSX2IPQ9Y2D8 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 SNORA78-201ENST00000459373 127 ntBASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 AC233702.5-201ENST00000584107 538 ntBASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 AC124016.1-201ENST00000609552 612 ntBASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 AC073912.3-201ENST00000624414 853 ntBASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.65■■□□□ 1.06
SSX2IPQ9Y2D8 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SSX2IPQ9Y2D8 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.06
SSX2IPQ9Y2D8 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SSX2IPQ9Y2D8 AIRN-201ENST00000601203 4374 ntBASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 AC110285.5-201ENST00000611501 352 ntBASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 AC006557.6-201ENST00000623071 864 ntBASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 AL023875.1-201ENST00000640777 796 ntBASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
SSX2IPQ9Y2D8 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms