Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.09■□□□□ 0.97
LIMD1Q9UGP4 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.09■□□□□ 0.97
LIMD1Q9UGP4 HTR7P1-201ENST00000538670 1336 ntBASIC21.08■□□□□ 0.97
LIMD1Q9UGP4 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
LIMD1Q9UGP4 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.08■□□□□ 0.97
LIMD1Q9UGP4 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LIMD1Q9UGP4 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC21.08■□□□□ 0.97
LIMD1Q9UGP4 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LIMD1Q9UGP4 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC21.08■□□□□ 0.97
LIMD1Q9UGP4 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.08■□□□□ 0.97
LIMD1Q9UGP4 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.08■□□□□ 0.96
LIMD1Q9UGP4 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LIMD1Q9UGP4 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.07■□□□□ 0.96
LIMD1Q9UGP4 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIMD1Q9UGP4 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIMD1Q9UGP4 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LIMD1Q9UGP4 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIMD1Q9UGP4 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC21.07■□□□□ 0.96
LIMD1Q9UGP4 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIMD1Q9UGP4 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LIMD1Q9UGP4 AL356652.1-201ENST00000615962 565 ntBASIC21.07■□□□□ 0.96
LIMD1Q9UGP4 MIR6786-201ENST00000616843 113 ntBASIC21.07■□□□□ 0.96
LIMD1Q9UGP4 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LIMD1Q9UGP4 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIMD1Q9UGP4 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
LIMD1Q9UGP4 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.07■□□□□ 0.96
LIMD1Q9UGP4 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LIMD1Q9UGP4 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LIMD1Q9UGP4 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.07■□□□□ 0.96
LIMD1Q9UGP4 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIMD1Q9UGP4 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIMD1Q9UGP4 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIMD1Q9UGP4 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.06■□□□□ 0.96
LIMD1Q9UGP4 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC21.06■□□□□ 0.96
LIMD1Q9UGP4 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
LIMD1Q9UGP4 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21.06■□□□□ 0.96
LIMD1Q9UGP4 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC21.06■□□□□ 0.96
LIMD1Q9UGP4 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIMD1Q9UGP4 FAM197Y1-201ENST00000421178 764 ntBASIC21.06■□□□□ 0.96
LIMD1Q9UGP4 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.06■□□□□ 0.96
LIMD1Q9UGP4 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC21.06■□□□□ 0.96
LIMD1Q9UGP4 AC005363.2-201ENST00000618631 242 ntBASIC21.06■□□□□ 0.96
LIMD1Q9UGP4 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC21.06■□□□□ 0.96
LIMD1Q9UGP4 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.06■□□□□ 0.96
LIMD1Q9UGP4 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIMD1Q9UGP4 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LIMD1Q9UGP4 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
LIMD1Q9UGP4 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LIMD1Q9UGP4 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC21.05■□□□□ 0.96
LIMD1Q9UGP4 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
LIMD1Q9UGP4 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
LIMD1Q9UGP4 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.05■□□□□ 0.96
LIMD1Q9UGP4 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LIMD1Q9UGP4 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.05■□□□□ 0.96
LIMD1Q9UGP4 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
LIMD1Q9UGP4 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC21.05■□□□□ 0.96
LIMD1Q9UGP4 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
LIMD1Q9UGP4 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.05■□□□□ 0.96
LIMD1Q9UGP4 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
LIMD1Q9UGP4 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.05■□□□□ 0.96
LIMD1Q9UGP4 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
LIMD1Q9UGP4 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.04■□□□□ 0.96
LIMD1Q9UGP4 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LIMD1Q9UGP4 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LIMD1Q9UGP4 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LIMD1Q9UGP4 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LIMD1Q9UGP4 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LIMD1Q9UGP4 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC21.04■□□□□ 0.96
LIMD1Q9UGP4 AC145285.6-201ENST00000604632 637 ntBASIC21.04■□□□□ 0.96
LIMD1Q9UGP4 Six3os1_6.1-201ENST00000620790 196 ntBASIC21.04■□□□□ 0.96
LIMD1Q9UGP4 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LIMD1Q9UGP4 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LIMD1Q9UGP4 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.04■□□□□ 0.96
LIMD1Q9UGP4 AC007375.3-201ENST00000600936 2314 ntBASIC21.04■□□□□ 0.96
LIMD1Q9UGP4 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.04■□□□□ 0.96
LIMD1Q9UGP4 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIMD1Q9UGP4 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LIMD1Q9UGP4 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIMD1Q9UGP4 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIMD1Q9UGP4 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIMD1Q9UGP4 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC21.03■□□□□ 0.96
LIMD1Q9UGP4 AC005521.1-201ENST00000393351 872 ntBASIC21.03■□□□□ 0.96
LIMD1Q9UGP4 KRT16P5-201ENST00000455284 522 ntBASIC21.03■□□□□ 0.96
LIMD1Q9UGP4 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC21.03■□□□□ 0.96
LIMD1Q9UGP4 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC21.03■□□□□ 0.96
LIMD1Q9UGP4 TPM1-226ENST00000560959 925 ntTSL 2 BASIC21.03■□□□□ 0.96
LIMD1Q9UGP4 RMI2-205ENST00000576027 818 ntTSL 2 BASIC21.03■□□□□ 0.96
LIMD1Q9UGP4 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC21.03■□□□□ 0.96
LIMD1Q9UGP4 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC21.03■□□□□ 0.96
LIMD1Q9UGP4 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIMD1Q9UGP4 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIMD1Q9UGP4 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LIMD1Q9UGP4 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.03■□□□□ 0.96
LIMD1Q9UGP4 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LIMD1Q9UGP4 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
LIMD1Q9UGP4 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIMD1Q9UGP4 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIMD1Q9UGP4 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIMD1Q9UGP4 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
LIMD1Q9UGP4 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms