Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 AC138907.5-202ENST00000569484 235 ntBASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 KRT16P2-201ENST00000414673 1423 ntBASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SMARCAL1Q9NZC9 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC21.19■□□□□ 0.98
SMARCAL1Q9NZC9 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCAL1Q9NZC9 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC21.19■□□□□ 0.98
SMARCAL1Q9NZC9 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.19■□□□□ 0.98
SMARCAL1Q9NZC9 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCAL1Q9NZC9 AC005332.7-201ENST00000614046 2005 ntBASIC21.19■□□□□ 0.98
SMARCAL1Q9NZC9 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCAL1Q9NZC9 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCAL1Q9NZC9 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
SMARCAL1Q9NZC9 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.19■□□□□ 0.98
SMARCAL1Q9NZC9 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCAL1Q9NZC9 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.19■□□□□ 0.98
SMARCAL1Q9NZC9 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SMARCAL1Q9NZC9 AC093484.2-201ENST00000580996 2166 ntBASIC21.19■□□□□ 0.98
SMARCAL1Q9NZC9 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
SMARCAL1Q9NZC9 PWWP2AP1-201ENST00000429776 2273 ntBASIC21.18■□□□□ 0.98
SMARCAL1Q9NZC9 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
SMARCAL1Q9NZC9 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC21.18■□□□□ 0.98
SMARCAL1Q9NZC9 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCAL1Q9NZC9 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC21.18■□□□□ 0.98
SMARCAL1Q9NZC9 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC21.18■□□□□ 0.98
SMARCAL1Q9NZC9 BX323043.1-201ENST00000641006 1765 ntBASIC21.18■□□□□ 0.98
SMARCAL1Q9NZC9 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCAL1Q9NZC9 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCAL1Q9NZC9 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCAL1Q9NZC9 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC21.18■□□□□ 0.98
SMARCAL1Q9NZC9 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.18■□□□□ 0.98
SMARCAL1Q9NZC9 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCAL1Q9NZC9 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCAL1Q9NZC9 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCAL1Q9NZC9 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCAL1Q9NZC9 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
SMARCAL1Q9NZC9 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCAL1Q9NZC9 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCAL1Q9NZC9 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCAL1Q9NZC9 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SMARCAL1Q9NZC9 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCAL1Q9NZC9 TNXA-203ENST00000507684 2038 ntBASIC21.17■□□□□ 0.98
SMARCAL1Q9NZC9 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.17■□□□□ 0.98
SMARCAL1Q9NZC9 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCAL1Q9NZC9 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCAL1Q9NZC9 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCAL1Q9NZC9 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCAL1Q9NZC9 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCAL1Q9NZC9 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
SMARCAL1Q9NZC9 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCAL1Q9NZC9 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCAL1Q9NZC9 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCAL1Q9NZC9 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCAL1Q9NZC9 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCAL1Q9NZC9 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
SMARCAL1Q9NZC9 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCAL1Q9NZC9 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCAL1Q9NZC9 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCAL1Q9NZC9 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC21.17■□□□□ 0.98
SMARCAL1Q9NZC9 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCAL1Q9NZC9 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SMARCAL1Q9NZC9 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCAL1Q9NZC9 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC21.16■□□□□ 0.98
SMARCAL1Q9NZC9 TREX1-205ENST00000625293 1783 ntBASIC21.16■□□□□ 0.98
SMARCAL1Q9NZC9 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.16■□□□□ 0.98
SMARCAL1Q9NZC9 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.16■□□□□ 0.98
SMARCAL1Q9NZC9 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCAL1Q9NZC9 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.16■□□□□ 0.98
SMARCAL1Q9NZC9 AC010141.2-201ENST00000452426 721 ntBASIC21.16■□□□□ 0.98
SMARCAL1Q9NZC9 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.16■□□□□ 0.98
SMARCAL1Q9NZC9 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCAL1Q9NZC9 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SMARCAL1Q9NZC9 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC21.16■□□□□ 0.98
SMARCAL1Q9NZC9 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC21.16■□□□□ 0.98
SMARCAL1Q9NZC9 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMARCAL1Q9NZC9 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms