Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
SMC4Q9NTJ3 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
SMC4Q9NTJ3 AL109923.1-201ENST00000618799 583 ntBASIC25.91■■□□□ 1.74
SMC4Q9NTJ3 GAMT-205ENST00000640762 751 ntTSL 5 BASIC25.91■■□□□ 1.74
SMC4Q9NTJ3 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
SMC4Q9NTJ3 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC25.91■■□□□ 1.74
SMC4Q9NTJ3 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
SMC4Q9NTJ3 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC25.9■■□□□ 1.74
SMC4Q9NTJ3 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
SMC4Q9NTJ3 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
SMC4Q9NTJ3 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC25.9■■□□□ 1.74
SMC4Q9NTJ3 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC25.9■■□□□ 1.74
SMC4Q9NTJ3 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
SMC4Q9NTJ3 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
SMC4Q9NTJ3 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
SMC4Q9NTJ3 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC25.9■■□□□ 1.74
SMC4Q9NTJ3 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
SMC4Q9NTJ3 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
SMC4Q9NTJ3 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
SMC4Q9NTJ3 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC25.89■■□□□ 1.74
SMC4Q9NTJ3 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC25.89■■□□□ 1.74
SMC4Q9NTJ3 C2orf69P4-201ENST00000565394 541 ntBASIC25.89■■□□□ 1.74
SMC4Q9NTJ3 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC25.89■■□□□ 1.74
SMC4Q9NTJ3 AC104771.1-201ENST00000603335 964 ntBASIC25.89■■□□□ 1.74
SMC4Q9NTJ3 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC25.89■■□□□ 1.74
SMC4Q9NTJ3 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.73
SMC4Q9NTJ3 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
SMC4Q9NTJ3 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC25.89■■□□□ 1.73
SMC4Q9NTJ3 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 AC099778.1-201ENST00000568593 1911 ntBASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 OR2A1-AS1-201ENST00000462305 773 ntBASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 AC098934.4-201ENST00000564127 592 ntBASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 AL138781.1-201ENST00000566567 1274 ntBASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
SMC4Q9NTJ3 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
SMC4Q9NTJ3 AC112907.3-201ENST00000577781 2400 ntBASIC25.87■■□□□ 1.73
SMC4Q9NTJ3 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC25.87■■□□□ 1.73
SMC4Q9NTJ3 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC25.87■■□□□ 1.73
SMC4Q9NTJ3 SERPINH1P1-201ENST00000419794 1249 ntBASIC25.87■■□□□ 1.73
SMC4Q9NTJ3 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC25.87■■□□□ 1.73
SMC4Q9NTJ3 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC25.87■■□□□ 1.73
SMC4Q9NTJ3 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC25.87■■□□□ 1.73
SMC4Q9NTJ3 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC25.87■■□□□ 1.73
SMC4Q9NTJ3 AC092118.2-201ENST00000613495 667 ntBASIC25.87■■□□□ 1.73
SMC4Q9NTJ3 PFKL-212ENST00000628044 129 ntTSL 3 BASIC25.87■■□□□ 1.73
SMC4Q9NTJ3 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
SMC4Q9NTJ3 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC25.87■■□□□ 1.73
SMC4Q9NTJ3 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
SMC4Q9NTJ3 PTBP1P-201ENST00000554374 1601 ntBASIC25.87■■□□□ 1.73
SMC4Q9NTJ3 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
SMC4Q9NTJ3 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC25.87■■□□□ 1.73
SMC4Q9NTJ3 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
SMC4Q9NTJ3 USP39-204ENST00000409766 2033 ntTSL 2 BASIC25.87■■□□□ 1.73
SMC4Q9NTJ3 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
SMC4Q9NTJ3 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC25.86■■□□□ 1.73
SMC4Q9NTJ3 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC25.86■■□□□ 1.73
SMC4Q9NTJ3 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
SMC4Q9NTJ3 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC25.86■■□□□ 1.73
SMC4Q9NTJ3 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
SMC4Q9NTJ3 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC25.86■■□□□ 1.73
SMC4Q9NTJ3 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC25.86■■□□□ 1.73
SMC4Q9NTJ3 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC25.86■■□□□ 1.73
SMC4Q9NTJ3 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC25.86■■□□□ 1.73
SMC4Q9NTJ3 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC25.86■■□□□ 1.73
SMC4Q9NTJ3 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC25.86■■□□□ 1.73
SMC4Q9NTJ3 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC25.86■■□□□ 1.73
SMC4Q9NTJ3 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SMC4Q9NTJ3 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SMC4Q9NTJ3 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC25.85■■□□□ 1.73
SMC4Q9NTJ3 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
SMC4Q9NTJ3 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SMC4Q9NTJ3 HLA-L-209ENST00000420110 1011 ntBASIC25.85■■□□□ 1.73
SMC4Q9NTJ3 DUSP5P2-201ENST00000426873 1033 ntBASIC25.85■■□□□ 1.73
SMC4Q9NTJ3 HES2-205ENST00000487437 968 ntTSL 3 BASIC25.85■■□□□ 1.73
SMC4Q9NTJ3 BRWD1-AS2-201ENST00000603064 1028 ntBASIC25.85■■□□□ 1.73
SMC4Q9NTJ3 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
SMC4Q9NTJ3 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
SMC4Q9NTJ3 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC25.85■■□□□ 1.73
SMC4Q9NTJ3 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SMC4Q9NTJ3 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC25.85■■□□□ 1.73
SMC4Q9NTJ3 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC25.85■■□□□ 1.73
SMC4Q9NTJ3 NXN-202ENST00000537628 1340 ntTSL 3 BASIC25.85■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms