Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRF2Q9HAW0 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
BRF2Q9HAW0 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.3■□□□□ 0.68
BRF2Q9HAW0 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.3■□□□□ 0.68
BRF2Q9HAW0 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.3■□□□□ 0.68
BRF2Q9HAW0 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRF2Q9HAW0 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
BRF2Q9HAW0 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.3■□□□□ 0.68
BRF2Q9HAW0 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRF2Q9HAW0 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
BRF2Q9HAW0 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.3■□□□□ 0.68
BRF2Q9HAW0 CYP2T3P-201ENST00000601990 817 ntBASIC19.3■□□□□ 0.68
BRF2Q9HAW0 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRF2Q9HAW0 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRF2Q9HAW0 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
BRF2Q9HAW0 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
BRF2Q9HAW0 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.3■□□□□ 0.68
BRF2Q9HAW0 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
BRF2Q9HAW0 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.29■□□□□ 0.68
BRF2Q9HAW0 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF2Q9HAW0 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF2Q9HAW0 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF2Q9HAW0 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF2Q9HAW0 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.29■□□□□ 0.68
BRF2Q9HAW0 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF2Q9HAW0 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF2Q9HAW0 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
BRF2Q9HAW0 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
BRF2Q9HAW0 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.29■□□□□ 0.68
BRF2Q9HAW0 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
BRF2Q9HAW0 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF2Q9HAW0 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF2Q9HAW0 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
BRF2Q9HAW0 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF2Q9HAW0 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF2Q9HAW0 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
BRF2Q9HAW0 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
BRF2Q9HAW0 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
BRF2Q9HAW0 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BRF2Q9HAW0 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.28■□□□□ 0.68
BRF2Q9HAW0 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.28■□□□□ 0.68
BRF2Q9HAW0 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BRF2Q9HAW0 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
BRF2Q9HAW0 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
BRF2Q9HAW0 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BRF2Q9HAW0 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
BRF2Q9HAW0 AL512625.2-201ENST00000417533 625 ntBASIC19.28■□□□□ 0.68
BRF2Q9HAW0 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.28■□□□□ 0.68
BRF2Q9HAW0 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BRF2Q9HAW0 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BRF2Q9HAW0 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
BRF2Q9HAW0 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
BRF2Q9HAW0 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BRF2Q9HAW0 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BRF2Q9HAW0 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.28■□□□□ 0.68
BRF2Q9HAW0 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
BRF2Q9HAW0 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
BRF2Q9HAW0 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
BRF2Q9HAW0 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
BRF2Q9HAW0 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
BRF2Q9HAW0 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
BRF2Q9HAW0 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
BRF2Q9HAW0 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
BRF2Q9HAW0 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
BRF2Q9HAW0 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.27■□□□□ 0.68
BRF2Q9HAW0 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
BRF2Q9HAW0 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.27■□□□□ 0.68
BRF2Q9HAW0 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
BRF2Q9HAW0 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
BRF2Q9HAW0 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.27■□□□□ 0.67
BRF2Q9HAW0 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
BRF2Q9HAW0 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.26■□□□□ 0.67
BRF2Q9HAW0 PTBP1P-201ENST00000554374 1601 ntBASIC19.26■□□□□ 0.67
BRF2Q9HAW0 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BRF2Q9HAW0 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
BRF2Q9HAW0 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BRF2Q9HAW0 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
BRF2Q9HAW0 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.26■□□□□ 0.67
BRF2Q9HAW0 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.26■□□□□ 0.67
BRF2Q9HAW0 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.26■□□□□ 0.67
BRF2Q9HAW0 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
BRF2Q9HAW0 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.26■□□□□ 0.67
BRF2Q9HAW0 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.26■□□□□ 0.67
BRF2Q9HAW0 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
BRF2Q9HAW0 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
BRF2Q9HAW0 AC010980.2-201ENST00000587099 1412 ntBASIC19.25■□□□□ 0.67
BRF2Q9HAW0 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.25■□□□□ 0.67
BRF2Q9HAW0 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
BRF2Q9HAW0 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BRF2Q9HAW0 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.25■□□□□ 0.67
BRF2Q9HAW0 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.25■□□□□ 0.67
BRF2Q9HAW0 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BRF2Q9HAW0 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
BRF2Q9HAW0 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BRF2Q9HAW0 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.25■□□□□ 0.67
BRF2Q9HAW0 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.25■□□□□ 0.67
BRF2Q9HAW0 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BRF2Q9HAW0 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
BRF2Q9HAW0 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
BRF2Q9HAW0 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms