Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
NUCKS1Q9H1E3 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.83■■□□□ 1.09
NUCKS1Q9H1E3 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
NUCKS1Q9H1E3 DPP3P2-201ENST00000416030 1696 ntBASIC21.83■■□□□ 1.09
NUCKS1Q9H1E3 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
NUCKS1Q9H1E3 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
NUCKS1Q9H1E3 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
NUCKS1Q9H1E3 KRT18P11-201ENST00000435214 1283 ntBASIC21.83■■□□□ 1.09
NUCKS1Q9H1E3 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.83■■□□□ 1.09
NUCKS1Q9H1E3 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.83■■□□□ 1.09
NUCKS1Q9H1E3 BID-214ENST00000617586 542 ntTSL 5 BASIC21.83■■□□□ 1.09
NUCKS1Q9H1E3 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
NUCKS1Q9H1E3 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
NUCKS1Q9H1E3 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.83■■□□□ 1.09
NUCKS1Q9H1E3 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC21.83■■□□□ 1.08
NUCKS1Q9H1E3 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.83■■□□□ 1.08
NUCKS1Q9H1E3 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.83■■□□□ 1.08
NUCKS1Q9H1E3 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC21.83■■□□□ 1.08
NUCKS1Q9H1E3 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
NUCKS1Q9H1E3 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC21.83■■□□□ 1.08
NUCKS1Q9H1E3 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.83■■□□□ 1.08
NUCKS1Q9H1E3 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.83■■□□□ 1.08
NUCKS1Q9H1E3 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
NUCKS1Q9H1E3 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC21.82■■□□□ 1.08
NUCKS1Q9H1E3 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NUCKS1Q9H1E3 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
NUCKS1Q9H1E3 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NUCKS1Q9H1E3 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NUCKS1Q9H1E3 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.82■■□□□ 1.08
NUCKS1Q9H1E3 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.82■■□□□ 1.08
NUCKS1Q9H1E3 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NUCKS1Q9H1E3 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NUCKS1Q9H1E3 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.82■■□□□ 1.08
NUCKS1Q9H1E3 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NUCKS1Q9H1E3 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NUCKS1Q9H1E3 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NUCKS1Q9H1E3 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.82■■□□□ 1.08
NUCKS1Q9H1E3 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.82■■□□□ 1.08
NUCKS1Q9H1E3 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.82■■□□□ 1.08
NUCKS1Q9H1E3 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NUCKS1Q9H1E3 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 MFSD11-216ENST00000590393 1141 ntBASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 AC080038.1-201ENST00000611274 1154 ntBASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 AC011767.1-201ENST00000617410 1153 ntBASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.81■■□□□ 1.08
NUCKS1Q9H1E3 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 MYCNOS-205ENST00000641950 531 ntBASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NUCKS1Q9H1E3 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
NUCKS1Q9H1E3 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NUCKS1Q9H1E3 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NUCKS1Q9H1E3 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
NUCKS1Q9H1E3 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NUCKS1Q9H1E3 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NUCKS1Q9H1E3 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
NUCKS1Q9H1E3 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
NUCKS1Q9H1E3 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC21.79■■□□□ 1.08
NUCKS1Q9H1E3 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.79■■□□□ 1.08
NUCKS1Q9H1E3 AC090192.1-201ENST00000517740 490 ntBASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms